|
Last change
on this file was
13998,
checked in by westram, 10 years ago
|
- partial update from 'trunk' into 'alilink'
- adds:
- log:branches/addtest@13123:13260,13523:13551,13570,13650:13653
- log:branches/check@13365:13375,13450:13457
- log:branches/check2@13458:13465
- log:branches/fix@13522:13588
- log:branches/fixres@13270:13326
- log:branches/pars@12938:13624,13628:13638
- log:branches/sativa@13202,13241,13263,13274,13304,13345
- log:branches/slv@13152:13190
- log:branches/vectorize@13428:13442
- log:trunk@13135:13694
|
|
File size:
718 bytes
|
| Line | |
|---|
| 1 | [raxml] |
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| 2 | raxml_home= |
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| 3 | raxml_exec=arb_raxml8_sativa.sh |
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| 4 | |
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| 5 | # rate heterogeneity model: GTRGAMMA, GTRCAT, AUTO |
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| 6 | raxml_model=auto |
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| 7 | |
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| 8 | # whether to load the optimized model parameters from a file |
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| 9 | # if set to false, optimization will be done in the beginning |
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| 10 | # (takes much time for big reference trees) |
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| 11 | epa_load_optmod=true |
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| 12 | |
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| 13 | # using EPA heuristic can tremendously speed up the computation, |
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| 14 | # since branch length optimization will be performed only for the |
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| 15 | # "most promising" branches for each QS (s. below) |
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| 16 | # |
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| 17 | # Values: TRUE, FALSE, AUTO (based on reference size) |
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| 18 | epa_use_heuristic=auto |
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| 19 | |
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| 20 | # proportion of "best" branches for branch length optimization |
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| 21 | # values near 0.01 (1%) should be OK for large trees (>10K) |
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| 22 | #epa_heur_rate=0.005 |
|---|
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