source: branches/alilink/TEMPLATES/arb_debug.h

Last change on this file was 11488, checked in by westram, 11 years ago
  • reintegrates 'tree' into 'trunk'
    • implements #417 (multifurcate tree)
    • tree display
      • adds MULTIFURC MODE
      • reordered modes (synchronizes NTREE and PARSIMONY)
    • branch analysis
      • display number of multifurcations in 'mark long branches'
      • display "in-tree-distance" and "per-species-distance"
    • added function to toggle '100%' bootstraps
    • document bug in GBT_remove_leafs (#452)
  • adds:
  • Property svn:eol-style set to native
  • Property svn:keywords set to Author Date Id Revision
File size: 2.0 KB
Line 
1// =============================================================== //
2//                                                                 //
3//   File      : arb_debug.h                                       //
4//   Purpose   : some debugging tools                              //
5//                                                                 //
6//   Coded by Ralf Westram (coder@reallysoft.de) in May 2007       //
7//   Institute of Microbiology (Technical University Munich)       //
8//   http://www.arb-home.de/                                       //
9//                                                                 //
10// =============================================================== //
11#ifndef ARB_DEBUG_H
12#define ARB_DEBUG_H
13
14#if defined(DEBUG)
15
16// if you get the valgrind warning
17// "Conditional jump or move depends on uninitialized value"
18// for a complex statement, use TEST_EXPR_INITIALIZED to find out
19// which part of the statement is the cause.
20
21#define TEST_EXPR_INITIALIZED(expr) do {     \
22        static bool t_i_b;              \
23                                        \
24        if (expr) t_i_b = false;        \
25        else      t_i_b = true;         \
26    } while (0)
27
28
29template <int OFF, int SIZE>
30static void CHECK_CMEM_INITIALIZED(const char *ptr) {
31    arb_assert(SIZE); // SIZE == 0 is invalid
32    if (SIZE == 1) {
33        TEST_EXPR_INITIALIZED(ptr[OFF]);
34    }
35    else {
36        const int HALF = SIZE/2;
37        CHECK_CMEM_INITIALIZED<OFF,HALF>(ptr);
38        CHECK_CMEM_INITIALIZED<OFF+HALF,SIZE-HALF>(ptr);
39    }
40}
41
42template <int SIZE>
43static void CHECK_MEM_INITIALIZED(const void *ptr) {
44    CHECK_CMEM_INITIALIZED<0,SIZE>((const char*)ptr);
45}
46
47#define TEST_INITIALIZED(data) CHECK_MEM_INITIALIZED< sizeof(data) >( &(data) )
48
49#else
50
51// create warning for forgotten debug code
52#define TEST_EXPR_INITIALIZED(expr) { int TEST_EXPR_INITIALIZED; }
53#define TEST_INITIALIZED(data) { int TEST_INITIALIZED; }
54#define THROW_VALGRIND_WARNING() { int THROW_VALGRIND_WARNING; }
55
56#endif // DEBUG
57
58#else
59#error arb_debug.h included twice
60#endif // ARB_DEBUG_H
61
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