source: branches/alilink/UNIT_TESTER/run/distance/matrix.dna.phylipComp.expected

Last change on this file was 12957, checked in by westram, 10 years ago
  • adds test for distance matrix
    • calculates matrices for
      • all sequence types
      • using 3 different transformations
        • autodetected for dna and pro
        • DI_TRANSFORMATION_FELSENSTEIN for rna (triggers overall frequency calculation)
    • save matrices in all available formats
    • covers all DIST-code-locations marked in [12942] (calculation using user-defined transformation-matrix remains untested)
  • few minor fixes
    • param constness
    • free/delete mismatch
    • useless access behind EOS (while printing NDS generated string in DI_SAVE_READABLE-mode)
File size: 532 bytes
Line 
1    10
2CytLyti6   
3TaxOcell   1.602103
4BctFra12   1.373944 3.000000
5StrRamo3   1.748911 3.000000 0.319010
6StrCoel9   3.000000 0.745530 3.000000 3.000000
7MucRacem   1.424811 2.173708 1.281520 1.602103 3.000000
8MucRace2   2.173708 3.000000 1.424811 1.538234 3.000000 1.281520
9MucRace3   1.479381 2.173708 1.602103 2.042943 3.000000 0.065796 1.931628
10AbdGlauc   2.809181 1.748911 3.000000 3.000000 1.748911 3.000000 3.000000 3.000000
11CddAlbic   1.671920 3.000000 1.199245 1.671920 3.000000 1.602103 1.326309 2.533388 3.000000
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