|
Last change
on this file was
12957,
checked in by westram, 10 years ago
|
- adds test for distance matrix
- calculates matrices for
- all sequence types
- using 3 different transformations
- autodetected for dna and pro
- DI_TRANSFORMATION_FELSENSTEIN for rna (triggers overall frequency calculation)
- save matrices in all available formats
- covers all DIST-code-locations marked in [12942] (calculation using
 -defined transformation-matrix remains untested)
- few minor fixes
- param constness
- free/delete mismatch
- useless access behind EOS (while printing NDS generated string in DI_SAVE_READABLE-mode)
|
|
File size:
2.8 KB
|
| Line | |
|---|
| 1 | C T B S S M M M A C |
|---|
| 2 | y a c t t u u u b d |
|---|
| 3 | t x t r r c c c d d |
|---|
| 4 | L O F R C R R R G A |
|---|
| 5 | y c r a o a a a l l |
|---|
| 6 | t e a m e c c c a b |
|---|
| 7 | i l 1 o l e e e u i |
|---|
| 8 | 6 l 2 3 9 m 2 3 c c |
|---|
| 9 | , , , , , , , , , , |
|---|
| 10 | |
|---|
| 11 | [ [ [ [ [ [ [ [ [ [ |
|---|
| 12 | A A A A X A A A A A |
|---|
| 13 | R R R R 7 R R R R R |
|---|
| 14 | B B B B 7 B B B B B |
|---|
| 15 | _ _ _ _ 0 _ _ _ _ _ |
|---|
| 16 | 6 2 4 3 4 5 3 7 A 1 |
|---|
| 17 | B 1 5 0 0 A 6 3 7 0 |
|---|
| 18 | 3 5 6 F ] D 2 C 0 F |
|---|
| 19 | 8 9 0 1 B 7 E 6 3 |
|---|
| 20 | 5 5 B 2 D F E F 6 |
|---|
| 21 | 2 E 4 B 6 1 A 3 2 |
|---|
| 22 | E F 1 A 6 2 7 1 7 |
|---|
| 23 | ] ] C 8 E 0 4 2 F |
|---|
| 24 | ] ] ] ] ] ] ] |
|---|
| 25 | |
|---|
| 26 | CytLyti6, [ARB_6B3852E] 0 1304 1372 949 768 891 540 1231 983 983 |
|---|
| 27 | TaxOcell, [ARB_21595EF] 1304 0 1389 1350 1446 1557 1272 1538 551 1458 |
|---|
| 28 | BctFra12, [ARB_4560B41C] 1372 1389 0 1168 1110 929 1316 873 911 1051 |
|---|
| 29 | StrRamo3, [ARB_30F12BA8] 949 1350 1168 0 0.2 304 726 269 184 224 |
|---|
| 30 | |
|---|
| 31 | StrCoel9, [X77040] 768 1446 1110 0.2 0 465 779 343 267 303 |
|---|
| 32 | MucRacem, [ARB_5ADBD66E] 891 1557 929 304 465 0 681 26.7 13.3 11.3 |
|---|
| 33 | MucRace2, [ARB_3627F120] 540 1272 1316 726 779 681 0 593 474 634 |
|---|
| 34 | MucRace3, [ARB_73CEEA74] 1231 1538 873 269 343 26.7 593 0 12.7 10.7 |
|---|
| 35 | |
|---|
| 36 | AbdGlauc, [ARB_A706F312] 983 551 911 184 267 13.3 474 12.7 0 0.0 |
|---|
| 37 | CddAlbic, [ARB_10F3627F] 983 1458 1051 224 303 11.3 634 10.7 0.0 0 |
|---|
| 38 | |
|---|
| 39 | Minimum: 0.000000 |
|---|
| 40 | Maximum: 1556.706920 |
|---|
| 41 | Average: 665.230903 |
|---|
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