source: branches/alilink/UNIT_TESTER/run/impexp/embl.input

ID   AF375552; SV 1; linear; genomic DNA; STD; PRO; 310 BP.
XX
CC   Please note: all these entries have been modified for test purposes.
XX
AC   AF375552;
XX
DT   31-MAY-2001 (Rel. 67, Created)
DT   26-JUL-2002 (Rel. 72, Last updated, Version 2)
XX
DE   Lactococcus lactis subsp. lactis strain NCDO2118 tmRNA gene, partial
DE   sequence.
XX
KW   .
XX
OS   Lactococcus lactis subsp. lactis
OC   Bacteria; Firmicutes; Lactobacillales; Streptococcaceae; Lactococcus.
XX
RN   [1]
RP   1-310
RX   DOI; 10.1186/1471-2180-1-20.
RX   PUBMED; 11560762.
RA   Schoenhuber W., Le Bourhis G., Tremblay J., Amann R., Kulakauskas S.;
RT   "Utilization of tmRNA sequences for bacterial identification";
RL   BMC Microbiol. 1(1):20-20(2001).
XX
RN   [2]
RP   1-310
RA   Schoenhuber W., Le Bourhis G., Tremblay J., Amann R.I., Kulakauskas S.;
RT   ;
RL   Submitted (02-MAY-2001) to the EMBL/GenBank/DDBJ databases.
RL   Microbiology, Institut National de la Recherche Agronomique, Domaine de
RL   Vilvert, Jouy-en-Josas 78352, France
XX
DR   RFAM; RF00023; tmRNA.
DR   StrainInfo; 213423; NCDO 2118.
XX
CC   Organism information
CC     Culture collection: NCDO 2118 tmRNA gene
CC   Sequence information (bases 1 to 327)
CC     Corresponding GenBank entry: AF375552;
CC   *source: strain=NCDO2118 tmRNA gene, partial sequence;
CC   *source: subspecies=lactis;
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..310
FT                   /organism="Lactococcus lactis subsp. lactis"
FT                   /sub_species="lactis"
FT                   /strain="NCDO2118"
FT                   /mol_type="genomic DNA"
FT                   /db_xref="taxon:1360"
FT   misc_RNA        <1..>310
FT                   /product="tmRNA"
XX
SQ   Sequence 310 BP; 91 A; 59 C; 74 G; 86 T; 0 other;
     cattgtcgcg catgaactgc aactgctgag ggatcaggat aatcatccgc agataaatat        60
     aactgctaaa aataatacac aaacttacgc aatggcagcc taaacagcac catgcgtgcc       120
     tgatttttgc tcactgatgg caatttgacg gcctaaactt ttagtcagat acgttgttgt       180
     ggaggcttga cgcagcaaaa gagatttaaa gccccgcaaa atgtcgctgt ttgagactgg       240
     ctttggcatt ttgttaaatt tgagaaagtc ctatggttgt agacgttgat gtagcaaggt       300
     gtttggacag                                                              310
//
ID   A1MVRNA2   standard; unassigned RNA; VRL; 2593 BP.
XX
AC   X01572; J02002; K02702;
XX
SV   X01572.1
XX
DT   07-NOV-1985 (Rel. 07, Created)
DT   17-FEB-1997 (Rel. 50, Last updated, Version 6)
XX
DE   Alfalfa mosaic virus (A1M4) RNA 2
XX
KW   unidentified reading frame.
XX
OS   Alfalfa mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Bromoviridae;
OC   Alfamovirus.
XX
RN   [1]
RP   1-2593
RX   MEDLINE; 83220723.
RX   PUBMED; 6304618.
RA   Cornelissen B.J., Brederode F.T.M., Veeneman G.H., van Boom J.H., Bol J.F.;
RT   "Complete nucleotide sequence of alfalfa mosaic virus RNA 2";
XX   old converter cant: RL   Nucleic Acids Res. 11(10):3019-3025(1983).
XX
DR   GOA; P03593.
DR   SWISS-PROT; P03593; V90K_AMVLE.
XX
CC   Data kindly reviewed (30-JAN-1986) by J.F. Bol
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2593
FT                   /db_xref="taxon:12321"
FT                   /mol_type="unassigned RNA"
FT                   /note="RNA2"
FT                   /virion
FT                   /organism="Alfalfa mosaic virus"
FT   CDS             55..2427
FT                   /db_xref="GOA:P03593"
FT                   /db_xref="SWISS-PROT:P03593"
FT                   /product="89.7 kd protein"
FT                   /protein_id="CAA25728.1"
FT                   /translation="MFTLLRCLGFGVNEPTNTSSSEYVPEYSVEEISNEVAELDSVDPL
FT                   FQCYKHVFVSLMLVRKMTQAAEDFLESFGGEFDSPCCRVYRLYRHFVNEDDAPAWAIPN
FT                   VVNEDSYDDYAYLREELDAIDSSFELLNEERELSEIT"
FT   variation       1431..1431
FT                   /note="c in pAL2-1; t in pAL2-[21,41]"
XX
SQ   Sequence 2593 BP; 736 A; 533 C; 547 G; 777 T; 0 other;
     gtttttatct tttcgcgatt gaaaagataa gtttttcagt ttaatctttt caatatgttc        60
     actcttttga gatgtctcgg attcggtgtt aatgaaccta ctaacacttc ctcatcagag       120
     tatgttcccg agtattccgt tgaagagatt tccaacgaag tcgctgaact cgattcagtg       180
     gatccattat tccaatgtta caaacatgtt tttgtatcat tgatgctcgt aagaaagatg       240
     actcaagctg ccgaagactt cctcgagagt tttgggggag a                           281
//
ID   ER781674_1; parent: ER781674
AC   ER781674;
XX
CC   Organism information
CC     Source of strain: This is the content of the special entry
CC           'Source of strain'
CC     Former name: This is the content of the special entry 'Former
CC           name'
CC     Alternate name: This is the content of the special entry
CC           'Alternate name'. It is quite long, since i need to test
CC           some special entry which occupies many lines and when i say
CC           many lines, i really mean at least five lines, so i could
CC           not stop writing before i came here.
CC     Common name: This is the content of the special entry 'Common
CC           name'
CC     Host organism: This is the content of the special entry 'Host
CC           organism'
CC   Sequence information (bases 1 to 367)
CC     RDP ID: This is the content of the special entry 'RDP ID'
CC     Corresponding GenBank entry: ER781674;
CC     Sequencing methods: This is the content of the special entry
CC           'Sequencing methods'
CC     5' end complete: Yes
CC     3' end complete: No
CC   Organism and Sequence information have only been added for
CC   test purposes. They are complete nonsense!
XX
FT   source          1..350
FT                   /organism="uncultured desert soil virus"
FT                   /environmental_sample
FT                   /mol_type="genomic DNA"
FT                   /clone_lib="Uncultured desert soil virus"
FT                   /note="Metagenomic sequences from uncultured viruses from
FT                   Joshua Tree desert soil."
FT                   /db_xref="taxon:445563"
SQ   Sequence   350 BP;
     tggcgccgta gatgcagcgc gactggcccg gcttctcggc gtcgaggtac tgcgccacgg        60
     ccttggcgct ggccacgtcc gggcagacca cgatgctctt gcgtgagccg gcgacgtgga       120
     cgatgccctt ggccagttcg atcatcgtct ggtcgttggt gatccgggcg gcgatctcgg       180
     cgtcggaata gtccttctcg ccggcctcgt tctccgccac ggtcagcgtg gagaagtcga       240
     tggagacgcg gacgaacgcc tgcttggcgg ggcagagcca taccgttggc catgcctcac       300
     aggatgtcgc ggttgaaggc gaggccctgg aacaggttgg ccatcgccac                  350
//
ID   AY704744_1; parent: AY704744
AC   AY704744;
FT   source          1..350
FT                   /organism="uncultured soil fungus"
FT                   /environmental_sample
FT                   /isolate="OTU-ZY14"
FT                   /mol_type="genomic DNA"
FT                   /isolation_source="agricultural soil"
FT                   /db_xref="taxon:167647"
CC   Next 2 lines are nonsense
CC     5' end complete: No
CC     3' end complete: Yes
SQ   Sequence   350 BP;
     gcatcgatga agaacgcagc gaaatgcgat aagtaatgtg aattgcagaa ttcagtgaat        60
     catcgaatct ttgaacgcac attgcgccca ttagtattct agtgggcatg cctgttcgag       120
     cgtcatttca acccttaagc ttagcttagt attgggaatc tgcttaaccg cagctcctta       180
     aatctagttg gcagagcaca gctgtactct gagcgtagta attcattatc tcgctttctg       240
     aagacagtcg tacgatagcc acaaactttg catcttgcaa actttttaat ggttgacctc       300
     ggatcaggta ggaatacccg ctgaacttaa gcatatcaat aagcggagga                  350
//
ID   Y15714; SV 1; linear; genomic DNA; STD; PRO; 1546 BP.
XX
AC   Y15714;
XX
DT   17-NOV-1998 (Rel. 57, Created)
DT   17-NOV-1998 (Rel. 57, Last updated, Version 1)
XX
DE   Macrococcus bovicus 16S rRNA gene
XX
KW   16S ribosomal RNA; 16S rRNA gene.
XX
OS   Macrococcus bovicus
OC   Bacteria; Firmicutes; Bacillales; Macrococcus.
XX
RN   [1]
RA   Kloos W.E., Ballard D.N., George C.G., Webster J.A., Hubner R.J.,
RA   Ludwig W., Schleifer K.H., Fiedler F., Schubert K.;
RT   "Delimiting the genus Staphylococcus through description of Macrococcus
RT   caseolyticus gen. nov., comb. nov. and the new species Macrococcus
RT   equipercicus sp. nov., Macrococcus bovicus sp. nov., and Macrococcus
RT   carouselicus sp. nov.";
RL   Int. J. Syst. Bacteriol. 48:859-877(1998).
XX
RN   [2]
RP   1-1546
RA   Ludwig W.;
RT   ;
RL   Submitted (26-NOV-1997) to the EMBL/GenBank/DDBJ databases.
RL   W. Ludwig, Lehrstuhl fuer Mikrobiologie, Technische Universitaet Muenchen,
RL   Munich, FRG
XX
DR   RFAM; RF00177; SSU_rRNA_5.
DR   SILVA-SSU; Y15714.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1546
FT                   /organism="Macrococcus bovicus"
FT                   /strain="L2F4"
FT                   /mol_type="genomic DNA"
FT                   /db_xref="taxon:69968"
FT   rRNA            1..1546
FT                   /gene="16S rRNA"
FT                   /product="16S ribosomal RNA"
XX
SQ   Sequence 1546 BP; 401 A; 353 C; 470 G; 320 T; 2 other;
     agagtttgat nngggctcag gatgaacgct ggcggcgtgc ctaatacatg caagtcgagc        60
     ggacagacga ggtgcttgca cctctgaagt cagcggcgga cgggtgagta acacgtgggt       120
     aacctacctg taagactggg ataacttcgg gaaaccggag ctaataccgg ataatatttt       180
     ccacctcatg gtggaatagt gaaagacggt tttgctgtca cttacagatg gacccgcggc       240
     gcattagcta gttggtgagg taacggctca ccaaggcgac gatgcgtagc cgacctgaga       300
     gggtgatcgg ccacactggg actgagacac ggcccagact cctacgggag gcagcagtag       360
     ggaatcttcc gcaatggacg aaagtctgac ggagcaacgc cgcgtgagtg aagaaggtct       420
     tcggatcgta aaactctgtt gtaagggaag aacaagtacg ttagtaactg aacgtacctt       480
     gacggtacct taccagaaag ccacggctaa ctacgtgcca gcagccgcgg taatacgtag       540
     gtggcaagcg ttatccggaa ttattgggcg taaagcgcgc gtaggcggtt tcttaagtct       600
     gatgtgaaag cccccggctc aaccggggag ggtcattgga aactgggaga cttgagtgca       660
     gaagaggaga gtggaattcc atgtgtagcg gtgaaatgcg cagagatatg gaggaacacc       720
     agtggcgaag gcggctctct ggtctgtaac tgacgctgag gtgcgaaagc gtggggatca       780
     aacaggatta gataccctgg tagtccacgc cgtaaacgat gagtgctaag tgttgggggg       840
     tttccgcccc tcagtgctgc agctaacgca ttaagcactc cgcctgggga gtacggtcgc       900
     aagactgaaa ctcaaaggaa ttgacgggga cccgcacaag cggtggagca tgtggtttaa       960
     ttcgaagcaa cgcgaagaac cttaccaaat cttgacatcc tctgacaact ctggagacag      1020
     agcgttcccc ttcgggggac agagtgacag gtggtgcatg gttgtcgtca gctcgtgtcg      1080
     tgagatgttg ggttaagtcc cgcaacgagc gcaaccctta tctttagttg ccatcattca      1140
     gttgggcact ctagagagac tgccggtgac aaaccggagg aaggtgggga tgacgtcaaa      1200
     tcatcatgcc ccttatgatt tgggctacac acgtgctaca atggatggta caaagggcag      1260
     caaaaccgcg aggtcaagca aatcccataa aaccattctc agttcggatt gtagtctgca      1320
     actcgactac atgaagctgg aatcgctagt aatcgtagat cagcatgcta cggtgaatac      1380
     gttcccgggt cttgtacaca ccgcccgtca caccacgaga gtttgtaaca cccgaagccg      1440
     gtggagtaac ctttacagga gctagccgtc gaaggtggga cagatgattg gggtgaagtc      1500
     gtaacaaggt agccgtatcg gaaggtgcgg ctggatcacc tccttt                     1546
//