|
Last change
on this file was
19939,
checked in by westram, 7 days ago
|
- fix broken mafft build for gcc 6.x-14.x:
- did not report failure.
- reactivated disabled rules (causing failure).
- fix dependencies (avoid core gets build twice in parallel).
- DRY calls to sub-Makefiles.
- build parallel by keeping MAKEFLAGS from arb build and using +.
- use A_CC (instead of hardcoding gcc)
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|
File size:
1.5 KB
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| 1 | # MAFFT for ARB |
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| 2 | # by Arne Boeckmann (2013) |
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| 3 | |
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| 4 | PROG = MAFFT |
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| 5 | |
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| 6 | export CC = $(A_CC) |
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| 7 | |
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| 8 | MAFFTDIR=mafft-7.055-with-extensions |
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| 9 | SCRIPTDIR=$(MAFFTDIR)/scripts |
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| 10 | BINDIR=$(MAFFTDIR)/binaries |
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| 11 | |
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| 12 | MAKEMAFFTCORE := $(MAKE) -C $(MAFFTDIR)/core |
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| 13 | MAKEMAFFTEXT := $(MAKE) -C $(MAFFTDIR)/extensions |
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| 14 | |
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| 15 | # ARBs standard target |
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| 16 | $(MAIN) : $(SCRIPTDIR) $(BINDIR) |
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| 17 | $(MAKE) mafft.stamp |
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| 18 | |
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| 19 | %.sync: # sync output - see ../../Makefile@sync |
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| 20 | @( export ID=$$$$; LANG=C; \ |
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| 21 | (( $(MAKE) $(@F:.sync=.nosync)) >$(@F).$$ID.log 2>&1 && \ |
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| 22 | (cat $(@F).$$ID.log;rm $(@F).$$ID.log)) || (cat $(@F).$$ID.log;rm $(@F).$$ID.log;false)) |
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| 23 | |
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| 24 | $(SCRIPTDIR): |
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| 25 | mkdir -p $@ |
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| 26 | |
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| 27 | $(BINDIR): |
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| 28 | mkdir -p $@ |
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| 29 | |
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| 30 | clean_core: clean_core.sync |
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| 31 | clean_core.nosync: |
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| 32 | +$(MAKEMAFFTCORE) clean |
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| 33 | |
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| 34 | clean_extensions: clean_extensions.sync |
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| 35 | clean_extensions.nosync: |
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| 36 | +$(MAKEMAFFTEXT) clean |
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| 37 | |
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| 38 | clean_here: |
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| 39 | rm -rf $(ARBHOME)/lib/mafft |
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| 40 | rm -f mafft.stamp |
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| 41 | rm -f $(ARBHOME)/bin/mafft* |
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| 42 | |
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| 43 | clean_dirs: |
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| 44 | rm -rf $(SCRIPTDIR) |
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| 45 | rm -rf $(BINDIR) |
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| 46 | |
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| 47 | clean: clean_core clean_extensions clean_here clean_dirs |
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| 48 | |
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| 49 | make_core : make_core.sync |
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| 50 | make_core.nosync: |
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| 51 | +$(MAKEMAFFTCORE) |
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| 52 | |
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| 53 | make_extensions : make_extensions.sync |
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| 54 | make_extensions.nosync: |
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| 55 | +$(MAKEMAFFTEXT) |
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| 56 | |
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| 57 | install_core: make_core |
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| 58 | $(MAKE) install_core.sync |
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| 59 | install_core.nosync: |
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| 60 | +$(MAKEMAFFTCORE) install |
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| 61 | |
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| 62 | install_extensions: install_core make_extensions |
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| 63 | $(MAKE) install_extensions.sync |
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| 64 | install_extensions.nosync: |
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| 65 | +$(MAKEMAFFTEXT) install |
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| 66 | |
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| 67 | mafft.stamp: install_extensions |
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| 68 | touch mafft.stamp |
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| 69 | |
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| 70 | .PHONY : clean clean_core clean_extensions clean_here make_core make_extensions |
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