| 1 | // ======================================================================================= |
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| 2 | // |
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| 3 | // File : ed4_ProteinViewer.hxx |
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| 4 | // Purpose : Protein viewer |
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| 5 | // Author : Yadhu Kumar (yadhu@arb-home.de) |
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| 6 | // web site : http://www.arb-home.de/ |
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| 7 | // |
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| 8 | // Copyright Department of Microbiology (Technical University Munich) |
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| 9 | // |
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| 10 | // ======================================================================================= |
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| 11 | |
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| 12 | #ifndef ED4_PROTEINVIEWER_HXX |
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| 13 | #define ED4_PROTEINVIEWER_HXX |
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| 14 | |
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| 15 | #ifndef ARBDB_BASE_H |
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| 16 | #include <arbdb_base.h> |
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| 17 | #endif |
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| 18 | #ifndef AW_BASE_HXX |
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| 19 | #include <aw_base.hxx> |
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| 20 | #endif |
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| 21 | |
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| 22 | |
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| 23 | // Define Awars |
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| 24 | #define AWAR_PROTVIEW "protView/" |
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| 25 | #define AWAR_PV_DISPLAY_ALL AWAR_PROTVIEW "display_all" |
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| 26 | #define AWAR_PROTVIEW_FORWARD_STRAND_1 AWAR_PROTVIEW "forward_strand_1" |
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| 27 | #define AWAR_PROTVIEW_FORWARD_STRAND_2 AWAR_PROTVIEW "forward_strand_2" |
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| 28 | #define AWAR_PROTVIEW_FORWARD_STRAND_3 AWAR_PROTVIEW "forward_strand_3" |
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| 29 | #define AWAR_PROTVIEW_COMPLEMENTARY_STRAND_1 AWAR_PROTVIEW "complementary_strand_1" |
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| 30 | #define AWAR_PROTVIEW_COMPLEMENTARY_STRAND_2 AWAR_PROTVIEW "complementary_strand_2" |
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| 31 | #define AWAR_PROTVIEW_COMPLEMENTARY_STRAND_3 AWAR_PROTVIEW "complementary_strand_3" |
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| 32 | #define AWAR_PROTVIEW_DEFINED_FIELDS AWAR_PROTVIEW "defined_fields" |
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| 33 | #define AWAR_PROTVIEW_DISPLAY_OPTIONS AWAR_PROTVIEW "display_options" |
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| 34 | |
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| 35 | // Awars for different display configurations |
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| 36 | #define AWAR_PV_SELECTED AWAR_PROTVIEW "selected" |
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| 37 | #define AWAR_PV_SELECTED_DB AWAR_PROTVIEW "selected_db" |
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| 38 | #define AWAR_PV_SELECTED_FS_1 AWAR_PROTVIEW "selected_fs_1" |
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| 39 | #define AWAR_PV_SELECTED_FS_2 AWAR_PROTVIEW "selected_fs_2" |
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| 40 | #define AWAR_PV_SELECTED_FS_3 AWAR_PROTVIEW "selected_fs_3" |
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| 41 | #define AWAR_PV_SELECTED_CS_1 AWAR_PROTVIEW "selected_cs_1" |
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| 42 | #define AWAR_PV_SELECTED_CS_2 AWAR_PROTVIEW "selected_cs_2" |
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| 43 | #define AWAR_PV_SELECTED_CS_3 AWAR_PROTVIEW "selected_cs_3" |
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| 44 | |
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| 45 | #define AWAR_PV_MARKED AWAR_PROTVIEW "marked" |
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| 46 | #define AWAR_PV_MARKED_DB AWAR_PROTVIEW "marked_db" |
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| 47 | #define AWAR_PV_MARKED_FS_1 AWAR_PROTVIEW "marked_fs_1" |
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| 48 | #define AWAR_PV_MARKED_FS_2 AWAR_PROTVIEW "marked_fs_2" |
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| 49 | #define AWAR_PV_MARKED_FS_3 AWAR_PROTVIEW "marked_fs_3" |
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| 50 | #define AWAR_PV_MARKED_CS_1 AWAR_PROTVIEW "marked_cs_1" |
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| 51 | #define AWAR_PV_MARKED_CS_2 AWAR_PROTVIEW "marked_cs_2" |
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| 52 | #define AWAR_PV_MARKED_CS_3 AWAR_PROTVIEW "marked_cs_3" |
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| 53 | |
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| 54 | #define AWAR_PV_CURSOR AWAR_PROTVIEW "cursor" |
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| 55 | #define AWAR_PV_CURSOR_DB AWAR_PROTVIEW "cursor_db" |
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| 56 | #define AWAR_PV_CURSOR_FS_1 AWAR_PROTVIEW "cursor_fs_1" |
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| 57 | #define AWAR_PV_CURSOR_FS_2 AWAR_PROTVIEW "cursor_fs_2" |
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| 58 | #define AWAR_PV_CURSOR_FS_3 AWAR_PROTVIEW "cursor_fs_3" |
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| 59 | #define AWAR_PV_CURSOR_CS_1 AWAR_PROTVIEW "cursor_cs_1" |
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| 60 | #define AWAR_PV_CURSOR_CS_2 AWAR_PROTVIEW "cursor_cs_2" |
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| 61 | #define AWAR_PV_CURSOR_CS_3 AWAR_PROTVIEW "cursor_cs_3" |
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| 62 | |
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| 63 | |
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| 64 | // Create Awars For Protein Viewer |
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| 65 | void PV_CreateAwars(AW_root *root, AW_default aw_def); |
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| 66 | |
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| 67 | // Create All Terminals |
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| 68 | void PV_CallBackFunction(AW_root *root); |
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| 69 | |
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| 70 | // Create ProteinViewer window |
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| 71 | AW_window *ED4_CreateProteinViewer_window(AW_root *aw_root); |
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| 72 | |
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| 73 | // callback function to update sequence change in EDITOR |
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| 74 | void PV_SequenceUpdate_CB(GB_CB_TYPE gbtype); |
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| 75 | |
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| 76 | // refresh all orf_terminal's |
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| 77 | void PV_RefreshWindow(AW_root *root); |
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| 78 | |
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| 79 | // Creates new orf_terminal's for new species added to the editor ** called from ED4_cursor.cxx ** |
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| 80 | void PV_AddCorrespondingOrfTerminals(class ED4_species_name_terminal *spNameTerm); |
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| 81 | |
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| 82 | // Creates new orf_terminal's when newly marked species is loaded |
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| 83 | void PV_AddOrfTerminalsToLoadedSpecies(); |
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| 84 | |
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| 85 | // flags to use in display options |
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| 86 | enum { |
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| 87 | PV_AA_CODE = 0, |
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| 88 | PV_AA_NAME, |
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| 89 | PV_AA_BOX |
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| 90 | }; |
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| 91 | |
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| 92 | #endif |
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