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Last change
on this file was
13603,
checked in by westram, 10 years ago
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Property svn:eol-style set to
native
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Property svn:keywords set to
Author Date Id Revision
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File size:
1.5 KB
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| 1 | /* |
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| 2 | dgg addition for new arb_readseq, 24 dec 92 |
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| 3 | */ |
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| 4 | |
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| 5 | item:Pretty print sequences (slow) ... |
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| 6 | itemmeta: P |
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| 7 | seqtype:* |
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| 8 | itemmethod: GOTO_LOCAL_DIR; \ |
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| 9 | (arb_readseq TmpInputFile -p -a -f=pretty $NAMELEFT $NAMERIGHT $NUMTOP $NUMBOT $NUMLEFT $NUMRIGHT -col=$COLS -width=$WIDTH $MATCH $GAPC > pretty.seq || STOP_ON_FAILURE(arb_readseq)) && \ |
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| 10 | (arb_textprint pretty.seq; \ |
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| 11 | RM_LOCAL_FILES(TmpInputFile pretty.seq) )& |
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| 12 | itemhelp:readseq.help |
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| 13 | |
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| 14 | in:TmpInputFile |
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| 15 | informat:genbank |
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| 16 | insave: |
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| 17 | |
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| 18 | arg:NAMETOP |
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| 19 | argtype:choice_menu |
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| 20 | arglabel:Names at top? |
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| 21 | argchoice:No: |
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| 22 | argchoice:Yes:-nametop |
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| 23 | |
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| 24 | arg:NAMELEFT |
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| 25 | argtype:choice_menu |
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| 26 | arglabel:Names at left? |
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| 27 | argchoice:No: |
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| 28 | argchoice:Yes:-nameleft |
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| 29 | |
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| 30 | arg:NAMERIGHT |
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| 31 | argtype:choice_menu |
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| 32 | arglabel:Names at right? |
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| 33 | argchoice:Yes:-nameright |
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| 34 | argchoice:No: |
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| 35 | |
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| 36 | arg:NUMTOP |
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| 37 | argtype:choice_menu |
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| 38 | arglabel:Numbers at top? |
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| 39 | argchoice:Yes:-numtop |
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| 40 | argchoice:No: |
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| 41 | |
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| 42 | arg:NUMBOT |
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| 43 | argtype:choice_menu |
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| 44 | arglabel:Numbers at tail? |
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| 45 | argchoice:No: |
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| 46 | argchoice:Yes:-numbot |
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| 47 | |
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| 48 | arg:NUMLEFT |
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| 49 | argtype:choice_menu |
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| 50 | arglabel:Numbers at left? |
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| 51 | argchoice:Yes:-numleft |
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| 52 | argchoice:No: |
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| 53 | |
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| 54 | arg:NUMRIGHT |
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| 55 | argtype:choice_menu |
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| 56 | arglabel:Numbers at right? |
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| 57 | argchoice:Yes:-numright |
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| 58 | argchoice:No: |
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| 59 | |
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| 60 | arg:MATCH |
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| 61 | argtype:choice_menu |
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| 62 | arglabel:Show difference to current species? |
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| 63 | argchoice:No: |
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| 64 | argchoice:Yes:-match |
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| 65 | |
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| 66 | arg:GAPC |
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| 67 | argtype:choice_menu |
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| 68 | arglabel:Count gap symbols? |
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| 69 | argchoice:No: |
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| 70 | argchoice:Yes:-gap |
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| 71 | |
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| 72 | arg:WIDTH |
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| 73 | argtype:slider |
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| 74 | arglabel:Sequence width? |
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| 75 | argmin:10 |
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| 76 | argmax:200 |
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| 77 | argvalue:100 |
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| 78 | |
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| 79 | arg:COLS |
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| 80 | argtype:slider |
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| 81 | arglabel:Column spacers? |
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| 82 | argmin:0 |
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| 83 | argmax:50 |
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| 84 | argvalue:10 |
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| 85 | |
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