source: branches/help/HELP_SOURCE/source/rna3d_general.hlp

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1#Please insert up references in the next lines (line starts with keyword UP)
2UP      arb.hlp
3UP      glossary.hlp
4UP      rna3d_manual.pdf
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6#Please insert subtopic references  (line starts with keyword SUB)
7#SUB    subtopic.hlp
8SUB     rna3d_dispMolecule.hlp
9SUB     rna3d_dispBases.hlp
10SUB     rna3d_dispHelices.hlp
11SUB     rna3d_mapSeqData.hlp
12
13# Hypertext links in helptext can be added like this: LINK{ref.hlp|http://add|bla@domain}
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15#************* Title of helpfile !! and start of real helpfile ********
16TITLE           RNA3D - molecole structure viewer
17
18                Visualization of Three-dimensional
19                structure of small subunit (16S) rRNA
20
21OCCURRENCE      In Primary Sequence Editor (ARB_EDIT4)
22
23DESCRIPTION
24
25    This program (RNA3D) displays the three-dimensional structure of small subunit (16S)
26    rRNA in OpenGL 3D environment. The annotation of RNA three-dimensional structures
27    consists of a preprocessing of the information embedded in their 3D coordinates. It
28    processes PDB structural information stored in the PDB file (1M5G) and used for
29    further structural analysis and searches. To provide user with the more detailed
30    perspective of 16S rRNA structure, structural information corresponding to the
31    ribosomal proteins were excluded during processing. The extracted structural information
32    is then fed to OpenGL engine, where it is further transformed into a hierarchy of
33    OpenGL objects, which encode molecule chains, residues and base positions. At this
34    stage, further processing may occur, for example when the user requests the mapping of
35    secondary structure information of rRNA onto the molecule in the form of loops and
36    stems. Any information derived from the multiple alignments (phylogenetic information)
37    is merged into the structural information or rRNA molecule in the post-processing
38    step.
39
40NOTES
41
42    More information regarding merging secondary structure information and mapping
43    individual rRNA sequence,sequence associated data, oligo-nucleotide probes can be found
44    in the respective help files. See "Subtopics" section.
45
46EXAMPLES        None
47
48WARNINGS        None
49
50BUGS            No bugs known
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