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Last change
on this file was
6516,
checked in by westram, 15 years ago
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- fixed compile error (assert)
- fixed includes
- added include wrappers
- renamed functions "overloaded" by defines
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-
Property svn:eol-style set to
native
-
Property svn:keywords set to
Author Date Id Revision
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File size:
1.2 KB
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| 1 | // ============================================================= // |
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| 2 | // // |
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| 3 | // File : trnsprob.h // |
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| 4 | // Purpose : // |
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| 5 | // // |
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| 6 | // Institute of Microbiology (Technical University Munich) // |
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| 7 | // http://www.arb-home.de/ // |
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| 8 | // // |
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| 9 | // ============================================================= // |
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| 10 | |
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| 11 | #ifndef TRNSPROB_H |
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| 12 | #define TRNSPROB_H |
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| 13 | |
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| 14 | |
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| 15 | #define MAXEDGE 1.2 |
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| 16 | |
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| 17 | #define ATOLPARAM 0.0001 |
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| 18 | #define RTOLPARAM 0.001 |
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| 19 | |
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| 20 | enum {T,C,A,G,N,N1,N2}; |
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| 21 | enum {REV,TN93,HKY85}; |
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| 22 | |
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| 23 | char encodeBase(char c); |
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| 24 | char decodeBase(char c); |
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| 25 | |
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| 26 | void normalizeBaseFreqs(double *F,double fT,double fC,double fA,double fG); |
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| 27 | void normalizeRateParams(double *X,double a,double b,double c,double d,double e,double f); |
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| 28 | |
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| 29 | void initTrnsprob(double ****PP); |
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| 30 | void uninitTrnsprob(double ****PP); |
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| 31 | |
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| 32 | void getTrnsprob(double **P,double ***PP,double d); |
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| 33 | |
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| 34 | void updateTrnsprob(double ***PP,double *F,double *X,short M); |
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| 35 | |
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| 36 | |
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| 37 | #else |
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| 38 | #error trnsprob.h included twice |
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| 39 | #endif // TRNSPROB_H |
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