| 1 | // =============================================================== // |
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| 2 | // // |
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| 3 | // File : AP_pos_var_pars.cxx // |
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| 4 | // Purpose : window interface for PVP calculation // |
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| 5 | // // |
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| 6 | // Institute of Microbiology (Technical University Munich) // |
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| 7 | // http://www.arb-home.de/ // |
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| 8 | // // |
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| 9 | // =============================================================== // |
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| 10 | |
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| 11 | #include "NT_local.h" |
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| 12 | |
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| 13 | #include <pvp.h> |
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| 14 | #include <TreeNode.h> |
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| 15 | |
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| 16 | #include <awt_sel_boxes.hxx> |
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| 17 | #include <awt_TreeAwars.hxx> |
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| 18 | |
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| 19 | #include <aw_root.hxx> |
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| 20 | #include <aw_awar.hxx> |
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| 21 | #include <aw_msg.hxx> |
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| 22 | |
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| 23 | #include <arb_progress.h> |
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| 24 | #include <arb_global_defs.h> |
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| 25 | |
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| 26 | #define AWAR_PVP_SAI "tmp/pos_var_pars/sai" |
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| 27 | #define AWAR_PVP_TREE "tmp/pos_var_pars/tree" |
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| 28 | |
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| 29 | static void AP_calc_pos_var_pars(AW_window *aww) { |
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| 30 | AW_root *root = aww->get_root(); |
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| 31 | |
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| 32 | char *ali_name = GBT_get_default_alignment(GLOBAL.gb_main); |
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| 33 | char *tree_name = root->awar(AWAR_PVP_TREE)->read_string(); |
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| 34 | char *sai_name = root->awar(AWAR_PVP_SAI)->read_string(); |
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| 35 | |
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| 36 | GB_ERROR error = PVP_calculate(GLOBAL.gb_main, ali_name, tree_name, sai_name); |
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| 37 | |
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| 38 | free(sai_name); |
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| 39 | free(tree_name); |
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| 40 | free(ali_name); |
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| 41 | |
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| 42 | aw_message_if(error); |
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| 43 | } |
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| 44 | |
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| 45 | AW_window *AP_create_pos_var_pars_window(AW_root *root) { |
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| 46 | GB_transaction ta(GLOBAL.gb_main); |
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| 47 | |
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| 48 | AW_window_simple *aws = new AW_window_simple; |
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| 49 | aws->init(root, "CSP_BY_PARSIMONY", "Conservation Profile: Parsimony Method"); |
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| 50 | aws->load_xfig("cpro/parsimony.fig"); |
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| 51 | |
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| 52 | root->awar_string(AWAR_PVP_SAI, "POS_VAR_BY_PARSIMONY", AW_ROOT_DEFAULT); |
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| 53 | const char *largest_tree = GBT_name_of_largest_tree(GLOBAL.gb_main); |
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| 54 | |
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| 55 | AW_awar *tree_awar = root->awar_string(AWAR_PVP_TREE, NO_TREE_SELECTED, AW_ROOT_DEFAULT); |
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| 56 | AWT_registerTreeAwarSimple(tree_awar); |
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| 57 | |
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| 58 | root->awar(AWAR_PVP_TREE)->write_string(largest_tree); |
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| 59 | |
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| 60 | aws->at("close"); |
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| 61 | aws->callback(AW_POPDOWN); |
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| 62 | aws->create_button("CLOSE", "CLOSE", "C"); |
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| 63 | |
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| 64 | aws->at("help"); aws->callback(makeHelpCallback("pos_var_pars.hlp")); |
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| 65 | aws->create_button("HELP", "HELP", "H"); |
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| 66 | |
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| 67 | aws->at("name"); |
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| 68 | aws->create_input_field(AWAR_PVP_SAI); |
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| 69 | |
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| 70 | aws->at("box"); |
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| 71 | awt_create_SAI_selection_list(GLOBAL.gb_main, aws, AWAR_PVP_SAI, false); |
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| 72 | |
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| 73 | aws->at("trees"); |
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| 74 | awt_create_TREE_selection_list(GLOBAL.gb_main, aws, AWAR_PVP_TREE, true); |
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| 75 | |
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| 76 | aws->at("go"); |
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| 77 | aws->highlight(); |
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| 78 | aws->callback(AP_calc_pos_var_pars); |
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| 79 | aws->create_button("GO", "GO"); |
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| 80 | |
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| 81 | return aws; |
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| 82 | } |
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