source: branches/help/NTREE/NT_local_proto.h

Last change on this file was 18634, checked in by westram, 4 years ago
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  • Property svn:keywords set to Author Date Id Revision
File size: 5.1 KB
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1/* This file is generated by aisc_mkpt.
2 * Any changes you make here will be overwritten later!
3 */
4
5#ifndef NT_LOCAL_PROTO_H
6#define NT_LOCAL_PROTO_H
7
8/* define ARB attributes: */
9#ifndef ATTRIBUTES_H
10# include <attributes.h>
11#endif
12
13
14/* AP_consensus.cxx */
15
16#ifndef AW_BASE_HXX
17#include <aw_base.hxx>
18#endif
19
20void AP_create_consensus_var(AW_root *aw_root, AW_default aw_def);
21AW_window *AP_create_con_expert_window(AW_root *aw_root);
22AW_window *AP_create_max_freq_window(AW_root *aw_root);
23
24/* AP_pos_var_pars.cxx */
25AW_window *AP_create_pos_var_pars_window(AW_root *root);
26
27/* ColumnStat_2_gnuplot.cxx */
28AW_window *NT_create_colstat_2_gnuplot_window(AW_root *root);
29
30/* NT_branchAnalysis.cxx */
31
32class TREE_canvas;
33
34AW_window *NT_create_branch_analysis_window(AW_root *aw_root, TREE_canvas *ntw);
35
36/* NT_cb.cxx */
37
38#ifndef ARBDB_BASE_H
39#include <arbdb_base.h>
40#endif
41class TREE_canvas;
42
43void NT_delete_mark_all_cb(AW_window *, TREE_canvas *ntw);
44AW_window *NT_create_select_tree_window(AW_root *awr, const char *awar_tree);
45void NT_select_bottom_tree(AW_window *aww, const char *awar_tree);
46void NT_create_alignment_vars(AW_root *aw_root, AW_default aw_def, GBDATA *gb_main);
47AW_window *NT_create_alignment_admin_window(AW_root *root, AW_window *aw_popmedown);
48AW_window *NT_create_select_alignment_window(AW_root *awr);
49
50/* NT_concatenate.cxx */
51void NT_createConcatenationAwars(AW_root *aw_root, AW_default aw_def, GBDATA *gb_main);
52AW_window *NT_createMergeSimilarSpeciesWindow(AW_root *aw_root);
53AW_window *NT_createConcatenationWindow(AW_root *aw_root);
54
55/* NT_dbrepair.cxx */
56GB_ERROR NT_repair_DB(GBDATA *gb_main);
57void NT_rerepair_DB(AW_window *, GBDATA *gb_main);
58
59/* NT_edconf.cxx */
60void NT_activate_configMarkers_display(TREE_canvas *ntw);
61void NT_popup_configuration_admin(AW_window *aw_main, TREE_canvas *ntw);
62AW_window *NT_create_startEditorOnOldConfiguration_window(AW_root *awr);
63void NT_start_editor_on_tree(AW_window *aww, int use_species_aside, TREE_canvas *ntw);
64void NT_create_config_after_import(TREE_canvas *ntw, bool imported_from_scratch);
65
66/* NT_extern.cxx */
67void NT_start(const char *arb_ntree_args, bool restart_with_new_ARB_PID);
68void NT_exit(AW_window *aws, int exitcode);
69void NT_restart(AW_root *aw_root, const char *arb_ntree_args);
70TreeNode *NT_get_tree_root_of_canvas(TREE_canvas *ntw);
71TREE_canvas *NT_get_canvas_by_index(int idx);
72void NT_fill_canvas_selection_list(class AW_selection_list *sellst, TREE_canvas *to_skip);
73void NT_deselect_group(AW_root *awr);
74TREE_canvas *NT_create_main_window(AW_root *aw_root);
75
76/* NT_group_search.cxx */
77TREE_canvas *NT_get_canvas_showing_tree(const char *tree_name, bool forceDisplay);
78
79/* NT_import.cxx */
80void NT_import_sequences(AW_window *aww, TREE_canvas *ntw);
81
82/* NT_join.cxx */
83AW_window *NT_create_species_join_window(AW_root *root);
84
85/* NT_main.cxx */
86GB_ERROR NT_format_all_alignments(GBDATA *gb_main);
87
88/* NT_shadeTree.cxx */
89void NT_install_treeShader(TREE_canvas *ntw, GBDATA *gb_main);
90void NT_configure_treeShader(void);
91
92/* NT_sort.cxx */
93void NT_resort_data_by_phylogeny(AW_window *, TREE_canvas *ntw);
94void NT_create_resort_awars(AW_root *awr, AW_default aw_def);
95AW_window *NT_create_resort_window(AW_root *awr);
96
97/* NT_sync_scroll.cxx */
98AW_window *NT_create_syncScroll_window(AW_root *awr, TREE_canvas *ntw);
99
100/* NT_syncroot.cxx */
101AW_window *NT_create_syncroot_window(AW_root *awr, GBDATA *gb_main);
102
103/* NT_taxonomy.cxx */
104void NT_create_compare_taxonomy_awars(AW_root *aw_root, AW_default props);
105AW_window *NT_create_compare_taxonomy_window(AW_root *aw_root, TREE_canvas *ntw);
106
107/* NT_trackAliChanges.cxx */
108void NT_create_trackAliChanges_Awars(AW_root *root, AW_default properties);
109AW_window *NT_create_trackAliChanges_window(AW_root *root);
110
111/* NT_userland_fixes.cxx */
112void NT_repair_userland_problems(void);
113
114/* NT_validManual.cxx */
115void NT_createValidNamesAwars(AW_root *aw_root, AW_default aw_def);
116AW_window *NT_create_searchManuallyNames_window(AW_root *aw_root);
117
118/* NT_validNames.cxx */
119void NT_deleteValidNames(AW_window *);
120void NT_importValidNames(AW_window *);
121void NT_suggestValidNames(AW_window *);
122
123/* ad_ext.cxx */
124void NT_create_extendeds_vars(AW_root *aw_root, AW_default aw_def, GBDATA *gb_main);
125AW_window *NT_create_extendeds_window(AW_root *aw_root);
126
127/* ad_spec.cxx */
128void NT_count_different_chars(AW_window *, GBDATA *gb_main);
129void NT_create_sai_from_pfold(AW_window *aww);
130
131/* ad_transpro.cxx */
132AW_window *NT_create_dna_2_pro_window(AW_root *root);
133AW_window *NT_create_realign_dna_window(AW_root *root);
134void NT_create_transpro_variables(AW_root *root, AW_default props);
135
136/* ad_trees.cxx */
137void NT_create_twoTreeSelection(AW_window *aws);
138AW_window *NT_create_compareTopologies_window(AW_root *root);
139AW_window *NT_create_moveGroupInfo_window(AW_root *root);
140AW_window *NT_create_consense_window(AW_root *aw_root);
141AW_window *NT_create_sort_tree_by_other_tree_window(AW_root *aw_root, TREE_canvas *ntw);
142void NT_create_multifurcate_tree_awars(AW_root *aw_root, AW_default props);
143AW_window *NT_create_multifurcate_tree_window(AW_root *aw_root, TREE_canvas *ntw);
144
145#else
146#error NT_local_proto.h included twice
147#endif /* NT_LOCAL_PROTO_H */
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