|
Last change
on this file was
12957,
checked in by westram, 10 years ago
|
- adds test for distance matrix
- calculates matrices for
- all sequence types
- using 3 different transformations
- autodetected for dna and pro
- DI_TRANSFORMATION_FELSENSTEIN for rna (triggers overall frequency calculation)
- save matrices in all available formats
- covers all DIST-code-locations marked in [12942] (calculation using
 -defined transformation-matrix remains untested)
- few minor fixes
- param constness
- free/delete mismatch
- useless access behind EOS (while printing NDS generated string in DI_SAVE_READABLE-mode)
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|
File size:
1.0 KB
|
| Line | |
|---|
| 1 | CytLyti6, [ARB_6B3852E] TaxOcell, [ARB_21595EF] BctFra12, [ARB_4560B41C] StrRamo3, [ARB_30F12BA8] StrCoel9, [X77040] MucRacem, [ARB_5ADBD66E] MucRace2, [ARB_3627F120] MucRace3, [ARB_73CEEA74] AbdGlauc, [ARB_A706F312] CddAlbic, [ARB_10F3627F] |
|---|
| 2 | CytLyti6, [ARB_6B3852E] -0 160 137 175 300 142 217 148 281 167 |
|---|
| 3 | TaxOcell, [ARB_21595EF] 160 -0 300 300 74,6 217 300 217 175 300 |
|---|
| 4 | BctFra12, [ARB_4560B41C] 137 300 -0 31,9 300 128 142 160 300 120 |
|---|
| 5 | StrRamo3, [ARB_30F12BA8] 175 300 31,9 -0 300 160 154 204 300 167 |
|---|
| 6 | StrCoel9, [X77040] 300 74,6 300 300 -0 300 300 300 175 300 |
|---|
| 7 | MucRacem, [ARB_5ADBD66E] 142 217 128 160 300 -0 128 6,6 300 160 |
|---|
| 8 | MucRace2, [ARB_3627F120] 217 300 142 154 300 128 -0 193 300 133 |
|---|
| 9 | MucRace3, [ARB_73CEEA74] 148 217 160 204 300 6,6 193 -0 300 253 |
|---|
| 10 | AbdGlauc, [ARB_A706F312] 281 175 300 300 175 300 300 300 -0 300 |
|---|
| 11 | CddAlbic, [ARB_10F3627F] 167 300 120 167 300 160 133 253 300 -0 |
|---|
| 12 | |
|---|
| 13 | Minimum: -0.000000 |
|---|
| 14 | Maximum: 300.000000 |
|---|
| 15 | Average: 190.594714 |
|---|
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