|
Last change
on this file was
16861,
checked in by westram, 7 years ago
|
- reintegrates 'unittest' into 'trunk'
- fixed non-deterministic behavior of add-species:
- 2 sequences in test-
 were identical (changed 1 bp)
- AP_tree_edge cannot be used to store insert-positions (uses pair of AP_tree_nlen instead)
- corrected some undefined behavior (results did depend on compiler version+flags):
- general order of inserts was undefined
- order of initial-insert was undefined (used by complete
 reconstruction)
- bugs fixed:
- not all possible insert-positions were tested
- sometimes species were added at wrong positions
- if multiple species were inserted at the same position, the following optimization
- did modify topology
- now optimizes all multi-inserts globally
- at leaf-positions: includes the leaf (Note: this does not modify the original topology)
- insert order now is "longest sequence first" (was "shortest sequence first")
- fixed unwanted behavior when testing for content of generated files
- adds: log:branches/unittest@16807:16860
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File size:
213 bytes
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| Line | |
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| 1 | 6 |
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| 2 | CorAquat |
|---|
| 3 | CorGluta 0.467102 |
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| 4 | CurCitre 0.074184 0.481299 |
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| 5 | CloButyr 0.412694 0.290879 0.361734 |
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| 6 | CloButy2 0.399648 0.302263 0.349483 0.007913 |
|---|
| 7 | CytAquat 0.510467 0.325527 0.467102 0.246888 0.246888 |
|---|
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