source: branches/help/UNIT_TESTER/run/distance/matrix.rna.tabbed.expected

Last change on this file was 16861, checked in by westram, 7 years ago
  • reintegrates 'unittest' into 'trunk'
    • fixed non-deterministic behavior of add-species:
      • 2 sequences in test-DB were identical (changed 1 bp)
      • AP_tree_edge cannot be used to store insert-positions (uses pair of AP_tree_nlen instead)
      • corrected some undefined behavior (results did depend on compiler version+flags):
        • general order of inserts was undefined
        • order of initial-insert was undefined (used by complete tree reconstruction)
    • bugs fixed:
      • not all possible insert-positions were tested
      • sometimes species were added at wrong positions
      • if multiple species were inserted at the same position, the following optimization
        • did modify topology
        • now optimizes all multi-inserts globally
        • at leaf-positions: includes the leaf (Note: this does not modify the original topology)
      • insert order now is "longest sequence first" (was "shortest sequence first")
    • fixed unwanted behavior when testing for content of generated files
  • adds: log:branches/unittest@16807:16860
File size: 675 bytes
Line 
1        CorAquat, CORYNEBACTERIUM AQUATICUM, 4  CorGluta, CORYNEBACTERIUM GLUTAMICUM, 3 CurCitre, CURTOBACTERIUM CITREUM, 5     CloButyr, CLOSTRIDIUM BUTYRICUM, 1      CloButy2, CLOSTRIDIUM BUTYRICUM, 2      CytAquat, CYTOPHAGA AQUATILIS, 6
2CorAquat, CORYNEBACTERIUM AQUATICUM, 4    -0    46,7     7,4    41,3    40,0    51,0
3CorGluta, CORYNEBACTERIUM GLUTAMICUM, 3 46,7      -0    48,1    29,1    30,2    32,6
4CurCitre, CURTOBACTERIUM CITREUM, 5      7,4    48,1      -0    36,2    34,9    46,7
5CloButyr, CLOSTRIDIUM BUTYRICUM, 1      41,3    29,1    36,2      -0     0,8    24,7
6CloButy2, CLOSTRIDIUM BUTYRICUM, 2      40,0    30,2    34,9     0,8      -0    24,7
7CytAquat, CYTOPHAGA AQUATILIS, 6        51,0    32,6    46,7    24,7    24,7      -0
8
9Minimum:        -0.000000
10Maximum:        51.046703
11Average:        27.467059
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