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source: branches/help/UNIT_TESTER/run/impexp/conv.PROTEIN_2_PHYLIP.expected

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Last change on this file was 7046, checked in by westram, 14 years ago

refactored CONVERTALN (merges [6885] [6886] [6888] [6889] [6890] [6891] [6894] [6906] [6907] [6908] [6910] [6911] [6914] [6915] [6916] [6917] [6918] [6922] [6923] [6925] [6927] [6928] [6929] [6930] [6931] [6933] [6934] [6935] [6937] [6945] [6950] [6956] [6961] [6962] [6963] [6964] [6965] [6967] [6968] [6972] [6973] [6974] [6975] [6976] [6977] [6979] [6980] [6981] [6982] [6983] [6985] [6986] [6987] [6988] [6990] [6991] [6992] [6993] [6994] [6995] [6996] [6997] [6998] [6999] [7002] [7003] [7008] [7009] [7010] [7011] [7012] [7025] [7026] [7027] [7029] [7030] [7031] [7032] [7034] [7035] [7036])
- build arb_convert_aln in ARB standard way
- added unit-test
- fixed various date bugs (even Y2K)
- fixed conversion MACKE → GCG.
- fixed crash in conversions EMBL/GENBANK → GCG
- fixed SWISSPROT→MACKE conversion
- dropped conversion support for ALMA
- removed completely unused "formats" NBRF and STADEN
- removed 1x1 sequence conversions for interleaved formats
- converter is more picky (fails instead of doing nonsense)
- added self conversions for all input formats
- proper formatting of 3/5 info
- proper line wrapping
- fixed acc broken by genbank reader
- fixed broken IDs (short-names)
- fixed embl reader (added number @ EOL to sequence data)
- errors now refer to the input file + linenumber
- abort with error if sequence data contains invalid characters
- removed C-interface for FileBuffer? (CONVERTALN was the only client)

File size: 344 bytes

Line
1	1 282
2	MA32_HUMAN MLPLLRCVPR VLGSSVAGLR AAAPASPFRQ LLQPAPRLCT RPFGLLSVRA
3
4	GSERRPGLLR PRGPCACGCG CGSLHTDGDK AFVDFLSDEI KEERKIQKHK TLPKMSGGWE
5
6	LELNGTEAKL VRKVAGEKIT VTFNINNSIP PTFDGEEEPS QGQKVEEQEP ELTSTPNFVV
7
8	EVIKNDDGKK ALVLDCHYPE DEVGQEDEAE SDIFSIREVS FQSTGESEWK DTNYTLNTDS
9
10	LDWALYDHLM DFLADRGVDN TFADELVELS TALEHQEYIT FLEDLKSFVK SQ

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