source: branches/help/UNIT_TESTER/run/impexp/macke.input

Last change on this file was 7046, checked in by westram, 14 years ago
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1#-
2#-
3#-      editor
4#-      Mon Oct 25 11:19:26 2010
5#-
6#-
7#-      Reference sequence:  AF375552;
8#-      Attributes:
9#=              AF375552;       in  out  vis  prt   ord  dna  lin  5>3  func ref
10#=              A1MVRNA2        in  out  vis  prt   ord  dna  lin  5>3  func
11#=              ER781674_1      in  out  vis  prt   ord  dna  lin  5>3  func
12#=              AY704744_1      in  out  vis  prt   ord  dna  lin  5>3  func
13#=              Y15714;         in  out  vis  prt   ord  dna  lin  5>3  func
14#-
15#:AF375552;:name:Lactococcus lactis subsp. lactis
16#:AF375552;:strain:NCDO2118 tmRNA gene, partial sequence
17#:AF375552;:subsp:lactis
18#:AF375552;:atcc:NCDO 2118 tmRNA gene
19#:AF375552;:date:31-MAY-2001
20#:AF375552;:acs:AF375552;
21#:AF375552;:auth:Schoenhuber,W., Le Bourhis,G., Tremblay,J., Amann,R. and
22#:AF375552;:auth:Kulakauskas,S.
23#:AF375552;:jour:BMC Microbiol. 1(1), 20-20 (2001)
24#:AF375552;:title:Utilization of tmRNA sequences for bacterial identification
25#:AF375552;:rem:ref:1  (bases 1 to 310)
26#:AF375552;:rem:ref:2  (bases 1 to 310)
27#:AF375552;:rem:auth:Schoenhuber,W., Le Bourhis,G., Tremblay,J., Amann,R.I.
28#:AF375552;:rem::  and Kulakauskas,S.
29#:AF375552;:rem:jour:Submitted (02-MAY-2001) to the EMBL/GenBank/DDBJ
30#:AF375552;:rem::  databases. Microbiology, Institut National de la Recherche
31#:AF375552;:rem::  Agronomique, Domaine de Vilvert, Jouy-en-Josas 78352,
32#:AF375552;:rem::  France
33#:AF375552;:rem:GenBank ACCESSION:AF375552;
34#:AF375552;:rem:Please note: all these entries have been modified for test
35#:AF375552;:rem:purposes.
36#:AF375552;:rem:*source: strain=NCDO2118 tmRNA gene, partial sequence;
37#:AF375552;:rem:*source: subspecies=lactis;
38#:A1MVRNA2:name:Alfalfa mosaic virus
39#:A1MVRNA2:date:07-NOV-1985
40#:A1MVRNA2:acs:X01572;
41#:A1MVRNA2:auth:Cornelissen,B.J., Brederode,F.T.M., Veeneman,G.H., van Boom,J.
42#:A1MVRNA2:auth:H. and Bol,J.F.
43#:A1MVRNA2:title:Complete nucleotide sequence of alfalfa mosaic virus RNA 2
44#:A1MVRNA2:rem:ref:1  (bases 1 to 2593)
45#:A1MVRNA2:rem:KEYWORDS:unidentified reading frame.
46#:A1MVRNA2:rem:GenBank ACCESSION:X01572; J02002; K02702;
47#:A1MVRNA2:rem:Data kindly reviewed (30-JAN-1986) by J.F. Bol
48#:ER781674_1:rna:This is the content of the special entry 'Sequencing methods'
49#:ER781674_1:date:25-OCT-2010
50#:ER781674_1:acs:ER781674;
51#:ER781674_1:rem:GenBank ACCESSION:ER781674;
52#:ER781674_1:rem:Source of strain:This is the content of the special entry
53#:ER781674_1:rem::  'Source of strain'
54#:ER781674_1:rem:Former name:This is the content of the special entry 'Former
55#:ER781674_1:rem::  name'
56#:ER781674_1:rem:Alternate name:This is the content of the special entry
57#:ER781674_1:rem::  'Alternate name'. It is quite long, since i need to test
58#:ER781674_1:rem::  some special entry which occupies many lines and when i
59#:ER781674_1:rem::  say many lines, i really mean at least five lines, so i
60#:ER781674_1:rem::  could not stop writing before i came here.
61#:ER781674_1:rem:Common name:This is the content of the special entry 'Common
62#:ER781674_1:rem::  name'
63#:ER781674_1:rem:Host organism:This is the content of the special entry 'Host
64#:ER781674_1:rem::  organism'
65#:ER781674_1:rem:RDP ID:This is the content of the special entry 'RDP ID'
66#:ER781674_1:rem:Sequencing methods:This is the content of the special entry
67#:ER781674_1:rem::  'Sequencing methods'
68#:ER781674_1:rem:3' end complete:  No
69#:ER781674_1:rem:5' end complete:  Yes
70#:ER781674_1:rem:Organism and Sequence information have only been added for
71#:ER781674_1:rem:test purposes. They are complete nonsense!
72#:AY704744_1:date:25-OCT-2010
73#:AY704744_1:acs:AY704744;
74#:AY704744_1:rem:GenBank ACCESSION:AY704744;
75#:AY704744_1:rem:3' end complete:  Yes
76#:AY704744_1:rem:5' end complete:  No
77#:AY704744_1:rem:Next 2 lines are nonsense
78#:Y15714;:name:Macrococcus bovicus
79#:Y15714;:date:17-NOV-1998
80#:Y15714;:acs:Y15714;
81#:Y15714;:auth:Kloos,W.E., Ballard,D.N., George,C.G., Webster,J.A., Hubner,R.J.
82#:Y15714;:auth:, Ludwig,W., Schleifer,K.H., Fiedler,F. and Schubert,K.
83#:Y15714;:jour:Int. J. Syst. Bacteriol. 48, 859-877 (1998)
84#:Y15714;:title:Delimiting the genus Staphylococcus through description of
85#:Y15714;:title:Macrococcus caseolyticus gen. nov., comb. nov. and the new
86#:Y15714;:title:species Macrococcus equipercicus sp. nov., Macrococcus bovicus
87#:Y15714;:title:sp. nov., and Macrococcus carouselicus sp. nov.
88#:Y15714;:rem:ref:1
89#:Y15714;:rem:ref:2  (bases 1 to 1546)
90#:Y15714;:rem:auth:Ludwig,W.
91#:Y15714;:rem:jour:Submitted (26-NOV-1997) to the EMBL/GenBank/DDBJ databases.
92#:Y15714;:rem::  W. Ludwig, Lehrstuhl fuer Mikrobiologie, Technische
93#:Y15714;:rem::  Universitaet Muenchen, Munich, FRG
94#:Y15714;:rem:KEYWORDS:16S ribosomal RNA; 16S rRNA gene.
95#:Y15714;:rem:GenBank ACCESSION:Y15714;
96AF375552;     0 cattgtcgcgcatgaactgcaactgctgagggatcaggataatcatccgc
97AF375552;    50 agataaatataactgctaaaaataatacacaaacttacgcaatggcagcc
98AF375552;   100 taaacagcaccatgcgtgcctgatttttgctcactgatggcaatttgacg
99AF375552;   150 gcctaaacttttagtcagatacgttgttgtggaggcttgacgcagcaaaa
100AF375552;   200 gagatttaaagccccgcaaaatgtcgctgtttgagactggctttggcatt
101AF375552;   250 ttgttaaatttgagaaagtcctatggttgtagacgttgatgtagcaaggt
102AF375552;   300 gtttggacag
103A1MVRNA2     0 gtttttatcttttcgcgattgaaaagataagtttttcagtttaatctttt
104A1MVRNA2    50 caatatgttcactcttttgagatgtctcggattcggtgttaatgaaccta
105A1MVRNA2   100 ctaacacttcctcatcagagtatgttcccgagtattccgttgaagagatt
106A1MVRNA2   150 tccaacgaagtcgctgaactcgattcagtggatccattattccaatgtta
107A1MVRNA2   200 caaacatgtttttgtatcattgatgctcgtaagaaagatgactcaagctg
108A1MVRNA2   250 ccgaagacttcctcgagagttttgggggaga
109ER781674_1     0 tggcgccgtagatgcagcgcgactggcccggcttctcggcgtcgaggtac
110ER781674_1    50 tgcgccacggccttggcgctggccacgtccgggcagaccacgatgctctt
111ER781674_1   100 gcgtgagccggcgacgtggacgatgcccttggccagttcgatcatcgtct
112ER781674_1   150 ggtcgttggtgatccgggcggcgatctcggcgtcggaatagtccttctcg
113ER781674_1   200 ccggcctcgttctccgccacggtcagcgtggagaagtcgatggagacgcg
114ER781674_1   250 gacgaacgcctgcttggcggggcagagccataccgttggccatgcctcac
115ER781674_1   300 aggatgtcgcggttgaaggcgaggccctggaacaggttggccatcgccac
116AY704744_1     0 gcatcgatgaagaacgcagcgaaatgcgataagtaatgtgaattgcagaa
117AY704744_1    50 ttcagtgaatcatcgaatctttgaacgcacattgcgcccattagtattct
118AY704744_1   100 agtgggcatgcctgttcgagcgtcatttcaacccttaagcttagcttagt
119AY704744_1   150 attgggaatctgcttaaccgcagctccttaaatctagttggcagagcaca
120AY704744_1   200 gctgtactctgagcgtagtaattcattatctcgctttctgaagacagtcg
121AY704744_1   250 tacgatagccacaaactttgcatcttgcaaactttttaatggttgacctc
122AY704744_1   300 ggatcaggtaggaatacccgctgaacttaagcatatcaataagcggagga
123Y15714;     0 agagtttgatnngggctcaggatgaacgctggcggcgtgcctaatacatg
124Y15714;    50 caagtcgagcggacagacgaggtgcttgcacctctgaagtcagcggcgga
125Y15714;   100 cgggtgagtaacacgtgggtaacctacctgtaagactgggataacttcgg
126Y15714;   150 gaaaccggagctaataccggataatattttccacctcatggtggaatagt
127Y15714;   200 gaaagacggttttgctgtcacttacagatggacccgcggcgcattagcta
128Y15714;   250 gttggtgaggtaacggctcaccaaggcgacgatgcgtagccgacctgaga
129Y15714;   300 gggtgatcggccacactgggactgagacacggcccagactcctacgggag
130Y15714;   350 gcagcagtagggaatcttccgcaatggacgaaagtctgacggagcaacgc
131Y15714;   400 cgcgtgagtgaagaaggtcttcggatcgtaaaactctgttgtaagggaag
132Y15714;   450 aacaagtacgttagtaactgaacgtaccttgacggtaccttaccagaaag
133Y15714;   500 ccacggctaactacgtgccagcagccgcggtaatacgtaggtggcaagcg
134Y15714;   550 ttatccggaattattgggcgtaaagcgcgcgtaggcggtttcttaagtct
135Y15714;   600 gatgtgaaagcccccggctcaaccggggagggtcattggaaactgggaga
136Y15714;   650 cttgagtgcagaagaggagagtggaattccatgtgtagcggtgaaatgcg
137Y15714;   700 cagagatatggaggaacaccagtggcgaaggcggctctctggtctgtaac
138Y15714;   750 tgacgctgaggtgcgaaagcgtggggatcaaacaggattagataccctgg
139Y15714;   800 tagtccacgccgtaaacgatgagtgctaagtgttggggggtttccgcccc
140Y15714;   850 tcagtgctgcagctaacgcattaagcactccgcctggggagtacggtcgc
141Y15714;   900 aagactgaaactcaaaggaattgacggggacccgcacaagcggtggagca
142Y15714;   950 tgtggtttaattcgaagcaacgcgaagaaccttaccaaatcttgacatcc
143Y15714;  1000 tctgacaactctggagacagagcgttccccttcgggggacagagtgacag
144Y15714;  1050 gtggtgcatggttgtcgtcagctcgtgtcgtgagatgttgggttaagtcc
145Y15714;  1100 cgcaacgagcgcaacccttatctttagttgccatcattcagttgggcact
146Y15714;  1150 ctagagagactgccggtgacaaaccggaggaaggtggggatgacgtcaaa
147Y15714;  1200 tcatcatgccccttatgatttgggctacacacgtgctacaatggatggta
148Y15714;  1250 caaagggcagcaaaaccgcgaggtcaagcaaatcccataaaaccattctc
149Y15714;  1300 agttcggattgtagtctgcaactcgactacatgaagctggaatcgctagt
150Y15714;  1350 aatcgtagatcagcatgctacggtgaatacgttcccgggtcttgtacaca
151Y15714;  1400 ccgcccgtcacaccacgagagtttgtaacacccgaagccggtggagtaac
152Y15714;  1450 ctttacaggagctagccgtcgaaggtgggacagatgattggggtgaagtc
153Y15714;  1500 gtaacaaggtagccgtatcggaaggtgcggctggatcacctccttt
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