|
Last change
on this file was
16861,
checked in by westram, 7 years ago
|
- reintegrates 'unittest' into 'trunk'
- fixed non-deterministic behavior of add-species:
- 2 sequences in test-
 were identical (changed 1 bp)
- AP_tree_edge cannot be used to store insert-positions (uses pair of AP_tree_nlen instead)
- corrected some undefined behavior (results did depend on compiler version+flags):
- general order of inserts was undefined
- order of initial-insert was undefined (used by complete
 reconstruction)
- bugs fixed:
- not all possible insert-positions were tested
- sometimes species were added at wrong positions
- if multiple species were inserted at the same position, the following optimization
- did modify topology
- now optimizes all multi-inserts globally
- at leaf-positions: includes the leaf (Note: this does not modify the original topology)
- insert order now is "longest sequence first" (was "shortest sequence first")
- fixed unwanted behavior when testing for content of generated files
- adds: log:branches/unittest@16807:16860
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|
File size:
568 bytes
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| 1 | ( |
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| 2 | ( |
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| 3 | ( |
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| 4 | ( |
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| 5 | ( |
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| 6 | ( |
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| 7 | ( |
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| 8 | ( |
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| 9 | ( |
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| 10 | CloTyro3:1.000, |
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| 11 | CloTyro4:0.027 |
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| 12 | ):0.056, |
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| 13 | CloTyro2:0.013 |
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| 14 | ):0.000, |
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| 15 | CloTyrob:0.013 |
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| 16 | ):0.394, |
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| 17 | CloInnoc:0.370 |
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| 18 | ):0.015, |
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| 19 | ( |
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| 20 | ( |
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| 21 | CloButy2:0.000, |
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| 22 | CloButyr:0.014 |
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| 23 | ):0.030, |
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| 24 | CloBifer:0.234 |
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| 25 | ):0.216 |
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| 26 | ):0.059, |
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| 27 | ( |
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| 28 | CloCarni:0.171, |
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| 29 | CloPaste:0.211 |
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| 30 | ):0.061 |
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| 31 | ):0.128, |
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| 32 | ( |
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| 33 | CorAquat:0.076, |
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| 34 | CurCitre:0.074 |
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| 35 | ):0.042 |
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| 36 | ):0.128, |
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| 37 | ( |
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| 38 | CorGluta:0.233, |
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| 39 | CytAquat:0.349 |
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| 40 | ):0.309 |
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| 41 | ):0.038, |
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| 42 | CelBiazo:0.038); |
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