|
Last change
on this file was
16861,
checked in by westram, 8 years ago
|
- reintegrates 'unittest' into 'trunk'
- fixed non-deterministic behavior of add-species:
- 2 sequences in test-
 were identical (changed 1 bp)
- AP_tree_edge cannot be used to store insert-positions (uses pair of AP_tree_nlen instead)
- corrected some undefined behavior (results did depend on compiler version+flags):
- general order of inserts was undefined
- order of initial-insert was undefined (used by complete
 reconstruction)
- bugs fixed:
- not all possible insert-positions were tested
- sometimes species were added at wrong positions
- if multiple species were inserted at the same position, the following optimization
- did modify topology
- now optimizes all multi-inserts globally
- at leaf-positions: includes the leaf (Note: this does not modify the original topology)
- insert order now is "longest sequence first" (was "shortest sequence first")
- fixed unwanted behavior when testing for content of generated files
- adds: log:branches/unittest@16807:16860
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|
File size:
517 bytes
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| Line | |
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| 1 | ( |
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| 2 | ( |
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| 3 | ( |
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| 4 | ( |
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| 5 | ( |
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| 6 | ( |
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| 7 | CorGluta:0.329, |
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| 8 | CytAquat:0.333 |
|---|
| 9 | ):0.085, |
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| 10 | CloBifer:0.204 |
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| 11 | ):0.092, |
|---|
| 12 | ( |
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| 13 | CloButy2:0.000, |
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| 14 | CloButyr:0.014 |
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| 15 | ):0.059 |
|---|
| 16 | ):0.270, |
|---|
| 17 | CloCarni:0.118 |
|---|
| 18 | ):0.117, |
|---|
| 19 | ( |
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| 20 | ( |
|---|
| 21 | ( |
|---|
| 22 | ( |
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| 23 | CloTyro3:1.000, |
|---|
| 24 | CloTyro4:0.027 |
|---|
| 25 | ):0.056, |
|---|
| 26 | CloTyro2:0.013 |
|---|
| 27 | ):0.000, |
|---|
| 28 | CloTyrob:0.013 |
|---|
| 29 | ):0.421, |
|---|
| 30 | CloInnoc:0.342 |
|---|
| 31 | ):0.181 |
|---|
| 32 | ):0.015, |
|---|
| 33 | ( |
|---|
| 34 | ( |
|---|
| 35 | ( |
|---|
| 36 | CelBiazo:0.165, |
|---|
| 37 | CorAquat:0.063 |
|---|
| 38 | ):0.014, |
|---|
| 39 | CurCitre:0.099 |
|---|
| 40 | ):0.192, |
|---|
| 41 | CloPaste:0.211 |
|---|
| 42 | ):0.015); |
|---|
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