| 1 | // =============================================================== // |
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| 2 | // // |
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| 3 | // File : rdp_info.cxx // |
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| 4 | // Purpose : // |
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| 5 | // // |
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| 6 | // =============================================================== // |
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| 7 | |
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| 8 | #include "rdp_info.h" |
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| 9 | #include "defs.h" |
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| 10 | #include "reader.h" |
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| 11 | |
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| 12 | bool parse_RDP_comment(RDP_comments& comments, RDP_comment_parser one_comment_entry, const char *key, int index, Reader& reader) { |
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| 13 | OrgInfo& orginf = comments.orginf; |
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| 14 | SeqInfo& seqinf = comments.seqinf; |
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| 15 | |
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| 16 | if (str_equal(key, "Source of strain:")) one_comment_entry(orginf.source, index, reader); |
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| 17 | else if (str_equal(key, "Culture collection:")) one_comment_entry(orginf.cultcoll, index, reader); |
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| 18 | else if (str_equal(key, "Former name:")) one_comment_entry(orginf.formname, index, reader); |
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| 19 | else if (str_equal(key, "Alternate name:")) one_comment_entry(orginf.nickname, index, reader); |
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| 20 | else if (str_equal(key, "Common name:")) one_comment_entry(orginf.commname, index, reader); |
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| 21 | else if (str_equal(key, "Host organism:")) one_comment_entry(orginf.hostorg, index, reader); |
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| 22 | else if (str_equal(key, "RDP ID:")) one_comment_entry(seqinf.RDPid, index, reader); |
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| 23 | else if (str_equal(key, "Corresponding GenBank entry:")) one_comment_entry(seqinf.gbkentry, index, reader); |
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| 24 | else if (str_equal(key, "Sequencing methods:")) one_comment_entry(seqinf.methods, index, reader); |
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| 25 | else if (str_equal(key, "5' end complete:")) { |
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| 26 | char flag[TOKENSIZE]; |
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| 27 | scan_token_or_die(flag, reader, index); |
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| 28 | if (flag[0] == 'Y') seqinf.comp5 = 'y'; |
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| 29 | else seqinf.comp5 = 'n'; |
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| 30 | ++reader; |
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| 31 | } |
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| 32 | else if (str_equal(key, "3' end complete:")) { |
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| 33 | char flag[TOKENSIZE]; |
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| 34 | scan_token_or_die(flag, reader, index); |
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| 35 | if (flag[0] == 'Y') seqinf.comp3 = 'y'; |
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| 36 | else seqinf.comp3 = 'n'; |
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| 37 | ++reader; |
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| 38 | } |
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| 39 | else if (str_equal(key, "Sequence information ")) ++reader; |
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| 40 | else if (str_equal(key, "Organism information")) ++reader; |
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| 41 | else { |
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| 42 | return false; |
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| 43 | } |
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| 44 | return true; |
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| 45 | } |
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| 46 | |
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| 47 | |
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| 48 | |
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| 49 | |
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