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Last change
on this file was
10371,
checked in by aboeckma, 12 years ago
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updated mafft version. Added extensions (no svn ignore, yet)
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File size:
830 bytes
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| Line | |
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| 1 | #include "energy_const.h" |
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| 2 | typedef struct { |
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| 3 | int id; |
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| 4 | int stack[NBPAIRS+1][NBPAIRS+1]; |
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| 5 | int hairpin[31]; |
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| 6 | int bulge[MAXLOOP+1]; |
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| 7 | int internal_loop[MAXLOOP+1]; |
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| 8 | int mismatchI[NBPAIRS+1][5][5]; |
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| 9 | int mismatchH[NBPAIRS+1][5][5]; |
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| 10 | int mismatchM[NBPAIRS+1][5][5]; |
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| 11 | int dangle5[NBPAIRS+1][5]; |
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| 12 | int dangle3[NBPAIRS+1][5]; |
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| 13 | int int11[NBPAIRS+1][NBPAIRS+1][5][5]; |
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| 14 | int int21[NBPAIRS+1][NBPAIRS+1][5][5][5]; |
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| 15 | int int22[NBPAIRS+1][NBPAIRS+1][5][5][5][5]; |
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| 16 | int F_ninio[5]; |
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| 17 | double lxc; |
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| 18 | int MLbase; |
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| 19 | int MLintern[NBPAIRS+1]; |
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| 20 | int MLclosing; |
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| 21 | int TerminalAU; |
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| 22 | int DuplexInit; |
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| 23 | int TETRA_ENERGY[200]; |
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| 24 | char Tetraloops[1401]; |
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| 25 | int Triloop_E[40]; |
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| 26 | char Triloops[241]; |
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| 27 | double temperature; |
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| 28 | } paramT; |
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| 29 | |
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| 30 | extern paramT *scale_parameters(void); |
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| 31 | extern paramT *copy_parameters(void); |
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| 32 | extern paramT *set_parameters(paramT *dest); |
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