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| 1 | #include "muscle.h" |
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| 2 | #include "msa.h" |
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| 3 | |
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| 4 | void Stabilize(const MSA &msa, MSA &msaStable) |
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| 5 | { |
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| 6 | const unsigned uSeqCount = msa.GetSeqCount(); |
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| 7 | const unsigned uColCount = msa.GetColCount(); |
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| 8 | |
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| 9 | msaStable.SetSize(uSeqCount, uColCount); |
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| 10 | for (unsigned uId = 0; uId < uSeqCount; ++uId) |
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| 11 | { |
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| 12 | const unsigned uSeqIndex = msa.GetSeqIndex(uId); |
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| 13 | msaStable.SetSeqName(uId, msa.GetSeqName(uSeqIndex)); |
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| 14 | msaStable.SetSeqId(uSeqIndex, uId); |
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| 15 | for (unsigned uColIndex = 0; uColIndex < uColCount; ++uColIndex) |
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| 16 | { |
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| 17 | const char c = msa.GetChar(uSeqIndex, uColIndex); |
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| 18 | msaStable.SetChar(uId, uColIndex, c); |
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| 19 | } |
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| 20 | } |
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| 21 | } |
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