| 1 | /* |
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| 2 | |
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| 3 | PHYML : a program that computes maximum likelihood phylogenies from |
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| 4 | DNA or AA homologous sequences |
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| 5 | |
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| 6 | Copyright (C) Stephane Guindon. Oct 2003 onward |
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| 7 | |
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| 8 | All parts of the source except where indicated are distributed under |
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| 9 | the GNU public licence. See http://www.opensource.org for details. |
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| 10 | |
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| 11 | */ |
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| 12 | |
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| 13 | #include <config.h> |
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| 14 | |
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| 15 | #ifndef NEXUS_H |
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| 16 | #define NEXUS_H |
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| 17 | |
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| 18 | #include "utilities.h" |
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| 19 | |
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| 20 | void Find_Nexus_Com(char *token,nexcom **found_com,nexparm **default_parm,nexcom **com_list); |
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| 21 | void Find_Nexus_Parm(char *token,nexparm **found_parm,nexcom *curr_com); |
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| 22 | int Read_Nexus_Taxa(char *token,nexparm *curr_parm,option *io); |
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| 23 | int Read_Nexus_Translate(char *token,nexparm *curr_parm,option *io); |
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| 24 | int Read_Nexus_Matrix(char *token,nexparm *curr_parm,option *io); |
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| 25 | int Read_Nexus_Tree(char *token,nexparm *curr_parm,option *io); |
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| 26 | int Read_Nexus_Begin(char *token,nexparm *curr_parm,option *io); |
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| 27 | int Read_Nexus_Dimensions(char *token,nexparm *curr_parm,option *io); |
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| 28 | int Read_Nexus_Format(char *token,nexparm *curr_parm,option *io); |
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| 29 | int Read_Nexus_Eliminate(char *token,nexparm *curr_parm,option *io); |
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| 30 | int Read_Nexus_Taxlabel(char *token,nexparm *curr_parm,option *io); |
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| 31 | int Read_Nexus_Charstatelabels(char *token,nexparm *curr_parm,option *io); |
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| 32 | int Read_Nexus_Charlabels(char *token,nexparm *curr_parm,option *io); |
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| 33 | int Read_Nexus_Statelabels(char *token,nexparm *curr_parm,option *io); |
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| 34 | |
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| 35 | #endif |
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