|
Last change
on this file was
11886,
checked in by westram, 12 years ago
|
- reintegrates 'cleanup' into 'trunk'
- adds:
|
-
Property svn:eol-style set to
native
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Property svn:keywords set to
Author Date Id Revision
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File size:
992 bytes
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| Line | |
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| 1 | item:Phylip Distance Methods (Original Phylip, Interactive) |
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| 2 | itemmeta: I |
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| 3 | seqtype:* |
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| 4 | itemmethod:(GOTO_LOCAL_DIR;GEN_PHYLIP(infile) && \ |
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| 5 | RUN_IN_WINDOW(($DPGM;\ |
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| 6 | mv -f outfile infile;\ |
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| 7 | (${ARB_XCMD} $PROGRAM || STOP_ON_FAILURE($PROGRAM)) && \ |
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| 8 | $DISPLAY_FUNC));\ |
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| 9 | RM_LOCAL_FILES(TmpInputFile))& |
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| 10 | itemhelp:phylip_distance.help |
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| 11 | |
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| 12 | arg:DISPLAY_FUNC |
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| 13 | argtype:choice_menu |
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| 14 | arglabel:What to do with the tree? |
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| 15 | argchoice:ARB ('tree_ph_xxx'):(arb_read_tree tree_ph_$$ outtree "PRG=$PROGRAM FILTER=$FILTER PKG=phylip (Interactive)") |
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| 16 | argchoice:TextEdit:arb_textedit outtree |
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| 17 | argchoice:Treetool:treetool outtree |
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| 18 | |
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| 19 | arg:PROGRAM |
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| 20 | arglabel:Which method? |
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| 21 | argtype:choice_menu |
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| 22 | argchoice:Fitch:fitch |
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| 23 | argchoice:Kitsch:kitsch |
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| 24 | argchoice:Neighbor:neighbor |
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| 25 | |
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| 26 | arg:DPGM |
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| 27 | arglabel:Treat data as.. |
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| 28 | argtype:choice_menu |
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| 29 | argchoice:RNA/DNA (dnadist):dnadist |
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| 30 | argchoice:AA (protdist):protdist |
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| 31 | |
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| 32 | |
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| 33 | in:TmpInputFile |
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| 34 | informat:genbank |
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| 35 | insave: |
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| 36 | |
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