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Last change
on this file was
19532,
checked in by westram, 4 months ago
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- reintegrates 'help' into 'trunk'
- tweak arb documentation:
- automatically link
- ticket references to arb
tracker (only affects html version).
- found URLs.
- page titles
- warn about long titles.
- introduce SUBTITLEs (automatically triggered by multi-line titles in source files).
- increase allowed length (limited by subwindow width).
- cleanup header sections in all helpfiles.
- fix and/or update several help files.
- document syntax of help sources.
- build issues:
- when xml validation fails, next build no longer uses invalid xml ⇒ keeps failing.
- remove output files on error (including files below ARBHOME/lib).
- pipe output through logs to ensure proper wrapping in Entering/Leaving lines.
- moves Tree admin + NDS menu entries to top of menu
- adds: log:branches/help@18783:19531
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-
Property svn:eol-style set to
native
-
Property svn:keywords set to
Author Date Id Revision
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File size:
1.4 KB
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| 1 | # main topics: |
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| 2 | UP arb.hlp |
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| 3 | UP glossary.hlp |
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| 4 | |
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| 5 | # sub topics: |
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| 6 | SUB man_arb_edit4.hlp |
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| 7 | SUB e4.hlp |
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| 8 | SUB species_configs.hlp |
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| 9 | |
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| 10 | # format described in ../help.readme |
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| 11 | |
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| 12 | |
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| 13 | TITLE How to start ARB_EDIT4 |
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| 14 | |
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| 15 | OCCURRENCE ARB_NT<3rd small rectangular button in top area> |
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| 16 | ARB_NT/Sequence/Edit Sequences/Using marked species and tree |
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| 17 | ARB_NT/Sequence/Edit Sequences/... plus relatives |
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| 18 | ARB_NT/Sequence/Edit Sequences/Using earlier configuration |
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| 19 | |
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| 20 | DESCRIPTION The ARB-editor |
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| 21 | |
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| 22 | SECTION How to start ARB_EDIT4? |
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| 23 | |
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| 24 | Standard: |
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| 25 | |
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| 26 | To load all marked sequences and all SAI's (defined in current alignment) |
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| 27 | as they are arranged and grouped in the currently shown tree, either |
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| 28 | |
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| 29 | * press the editor button in the upper panel (below the 'ali_xxx' button) or |
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| 30 | * use "Sequence/Edit Sequences/Using marked species and tree" |
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| 31 | |
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| 32 | Plus relatives: |
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| 33 | |
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| 34 | To load species as described in 'Standard' above and additionally add a number |
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| 35 | of closest relatives (=species adjacent to marked species in tree), |
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| 36 | use "Sequence/Edit Sequences/... plus relatives" and then specify the number |
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| 37 | of relatives to add. |
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| 38 | |
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| 39 | Using earlier configurations: |
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| 40 | |
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| 41 | To load an earlier configuration |
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| 42 | use "Sequence/Edit Sequences/Using earlier configuration" |
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| 43 | and select the configuration from the popup window. |
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| 44 | |
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| 45 | See LINK{species_configs_saveload.hlp} for HOWTO create such configurations. |
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| 46 | |
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| 47 | NOTES None |
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| 48 | |
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| 49 | EXAMPLES None |
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| 50 | |
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| 51 | WARNINGS None |
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| 52 | |
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| 53 | BUGS No bugs known |
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