source: branches/lib/HELP_SOURCE/source/arb_edit4.hlp

Last change on this file was 19532, checked in by westram, 4 months ago
  • reintegrates 'help' into 'trunk'
    • tweak arb documentation:
      • automatically link
        • ticket references to arb bug tracker (only affects html version).
        • found URLs.
      • page titles
        • warn about long titles.
        • introduce SUBTITLEs (automatically triggered by multi-line titles in source files).
        • increase allowed length (limited by subwindow width).
      • cleanup header sections in all helpfiles.
      • fix and/or update several help files.
      • document syntax of help sources.
      • build issues:
        • when xml validation fails, next build no longer uses invalid xml ⇒ keeps failing.
        • remove output files on error (including files below ARBHOME/lib).
        • pipe output through logs to ensure proper wrapping in Entering/Leaving lines.
    • moves Tree admin + NDS menu entries to top of menu
  • adds: log:branches/help@18783:19531
  • Property svn:eol-style set to native
  • Property svn:keywords set to Author Date Id Revision
File size: 1.4 KB
Line 
1#       main topics:
2UP      arb.hlp
3UP      glossary.hlp
4
5#       sub topics:
6SUB     man_arb_edit4.hlp
7SUB     e4.hlp
8SUB     species_configs.hlp
9
10# format described in ../help.readme
11
12
13TITLE           How to start ARB_EDIT4
14
15OCCURRENCE      ARB_NT<3rd small rectangular button in top area>
16                ARB_NT/Sequence/Edit Sequences/Using marked species and tree
17                ARB_NT/Sequence/Edit Sequences/... plus relatives
18                ARB_NT/Sequence/Edit Sequences/Using earlier configuration
19
20DESCRIPTION     The ARB-editor
21
22SECTION How to start ARB_EDIT4?
23
24    Standard:
25
26      To load all marked sequences and all SAI's (defined in current alignment)
27      as they are arranged and grouped in the currently shown tree, either
28
29      * press the editor button in the upper panel (below the 'ali_xxx' button) or
30      * use "Sequence/Edit Sequences/Using marked species and tree"
31
32    Plus relatives:
33
34      To load species as described in 'Standard' above and additionally add a number
35      of closest relatives (=species adjacent to marked species in tree),
36      use "Sequence/Edit Sequences/... plus relatives" and then specify the number
37      of relatives to add.
38
39    Using earlier configurations:
40
41      To load an earlier configuration
42      use "Sequence/Edit Sequences/Using earlier configuration"
43      and select the configuration from the popup window.
44
45      See LINK{species_configs_saveload.hlp} for HOWTO create such configurations.
46
47NOTES           None
48
49EXAMPLES        None
50
51WARNINGS        None
52
53BUGS            No bugs known
Note: See TracBrowser for help on using the repository browser.