source: branches/lib/HELP_SOURCE/source/e4_get_species.hlp

Last change on this file was 19532, checked in by westram, 4 months ago
  • reintegrates 'help' into 'trunk'
    • tweak arb documentation:
      • automatically link
        • ticket references to arb bug tracker (only affects html version).
        • found URLs.
      • page titles
        • warn about long titles.
        • introduce SUBTITLEs (automatically triggered by multi-line titles in source files).
        • increase allowed length (limited by subwindow width).
      • cleanup header sections in all helpfiles.
      • fix and/or update several help files.
      • document syntax of help sources.
      • build issues:
        • when xml validation fails, next build no longer uses invalid xml ⇒ keeps failing.
        • remove output files on error (including files below ARBHOME/lib).
        • pipe output through logs to ensure proper wrapping in Entering/Leaving lines.
    • moves Tree admin + NDS menu entries to top of menu
  • adds: log:branches/help@18783:19531
File size: 2.0 KB
Line 
1#       main topics:
2UP      arb.hlp
3UP      glossary.hlp
4
5#       sub topics:
6#SUB     subtopic.hlp
7
8# format described in ../help.readme
9
10
11TITLE           Load species/SAI into running editor
12
13OCCURRENCE      ARB_EDIT4/<GET-button>
14                ARB_EDIT4/<JUMP-button>
15                ARB_EDIT4/Edit/Load current species
16                ARB_EDIT4/Edit/Load marked species
17                ARB_EDIT4/Edit/Load SAI ...
18
19DESCRIPTION     Several functions allow to load missing species into a running ARB_EDIT4 instance.
20
21                GET-button in top area:
22
23                        Loads the currently LINK{selected.hlp} into the editor.
24
25                JUMP-button in top area:
26
27                        Jumps to the LINK{selected.hlp}, i.e. scrolls the species into
28                        the viewport and places the cursor into the species.
29
30                        If the species is inside a folded group, this group and any
31                        folded parent groups will be unfolded.
32
33                        In general the editor will automatically jump to the
34                        LINK{selected.hlp}, unless the species is in a folded group.
35
36                        If the species is not loaded into the editor yet, the JUMP
37                        button behaves like the GET button, i.e. loads the species and
38                        then jumps to it.
39
40                ARB_EDIT4/Edit/Load current species:
41
42                        Same as GET button
43
44                ARB_EDIT4/Edit/Load marked species:
45
46                        Similar to GET button, but operates on all marked species.
47
48                ARB_EDIT4/Edit/Load SAI ...:
49
50                        Allows to load missing SAIs.
51
52                        Select one of the (not yet loaded) SAIs from
53                        the popup list and press LOAD.
54
55                        If the list is empty, all SAIs with data in the
56                        alignment (used by ARB_EDIT4) are already loaded.
57
58NOTES           When loading (a previously missing) species or SAI into ARB_EDIT4,
59                it will be placed in a group named 'More Sequences'.
60
61EXAMPLES        None
62
63WARNINGS        None
64
65BUGS            No bugs known
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