source: branches/lib/HELP_SOURCE/source/gen_create.hlp

Last change on this file was 19532, checked in by westram, 4 months ago
  • reintegrates 'help' into 'trunk'
    • tweak arb documentation:
      • automatically link
        • ticket references to arb bug tracker (only affects html version).
        • found URLs.
      • page titles
        • warn about long titles.
        • introduce SUBTITLEs (automatically triggered by multi-line titles in source files).
        • increase allowed length (limited by subwindow width).
      • cleanup header sections in all helpfiles.
      • fix and/or update several help files.
      • document syntax of help sources.
      • build issues:
        • when xml validation fails, next build no longer uses invalid xml ⇒ keeps failing.
        • remove output files on error (including files below ARBHOME/lib).
        • pipe output through logs to ensure proper wrapping in Entering/Leaving lines.
    • moves Tree admin + NDS menu entries to top of menu
  • adds: log:branches/help@18783:19531
File size: 1.9 KB
Line 
1#       main topics:
2UP      arb.hlp
3UP      glossary.hlp
4UP      gene_info.hlp
5
6#       sub topics:
7#SUB     subtopic.hlp
8
9# format described in ../help.readme
10
11
12TITLE           Create Gene / Edit location
13
14OCCURRENCE      ARB_NT/Genome/Gene Information/GENE/Create
15                ARB_NT/Genome/Gene Information/FIELDS/Edit gene location
16
17DESCRIPTION     Creates a new gene entry or edits the location of an existing gene entry.
18
19                When creating a new gene, type a unique gene name into 'Gene'.
20
21                To edit the location of the gene you may either
22                - edit the 'Location' field or
23                - edit the detailed fields in the lower part of the window.
24
25                Changing any of them updates the other.
26
27                The field 'Status' gives hints about the validity of the location.
28
29                Certainty fields may contain
30
31                          Character     Meaning
32                          =             exact position
33                          <             somewhere before position
34                          >             somewhere behind position
35                          +/-           directly behind/before position
36
37                '+' and '-' are special and only allowed for locations like '7^8' (which marks the
38                location between base number 7 and 8)
39
40                When you are satisfied with the entered location, press 'Create gene'.
41
42                In case of editing the location of an existing gene, the gene is updated everytime
43                the location has a valid state. That allows an open ARB_EDIT4 which automatically
44                searches and highlights the gene sequence.
45
46EXAMPLES
47
48        Example locations:
49
50                10..15
51
52                <10..>15
53
54                join(10..15,20..350)
55
56                join(10..15,complement(20..350))
57
58                20^21
59
60
61WARNINGS        None
62
63BUGS            No bugs known
Note: See TracBrowser for help on using the repository browser.