|
Last change
on this file was
19532,
checked in by westram, 4 months ago
|
- reintegrates 'help' into 'trunk'
- tweak arb documentation:
- automatically link
- ticket references to arb
 tracker (only affects html version).
- found URLs.
- page titles
- warn about long titles.
- introduce SUBTITLEs (automatically triggered by multi-line titles in source files).
- increase allowed length (limited by subwindow width).
- cleanup header sections in all helpfiles.
- fix and/or update several help files.
- document syntax of help sources.
- build issues:
- when xml validation fails, next build no longer uses invalid xml ⇒ keeps failing.
- remove output files on error (including files below ARBHOME/lib).
- pipe output through logs to ensure proper wrapping in Entering/Leaving lines.
- moves Tree admin + NDS menu entries to top of menu
- adds: log:branches/help@18783:19531
|
-
Property svn:eol-style set to
native
-
Property svn:keywords set to
Author Date Id Revision
|
|
File size:
1.8 KB
|
| Line | |
|---|
| 1 | # main topics: |
|---|
| 2 | UP arb.hlp |
|---|
| 3 | UP glossary.hlp |
|---|
| 4 | |
|---|
| 5 | # sub topics: |
|---|
| 6 | SUB aci.hlp |
|---|
| 7 | |
|---|
| 8 | # format described in ../help.readme |
|---|
| 9 | |
|---|
| 10 | |
|---|
| 11 | TITLE Define fields exported with gene species |
|---|
| 12 | |
|---|
| 13 | OCCURRENCE ARB_NT/Export/Export .. to new ARB database/Transfer Species/Source->Target/Define field transfer for gene species |
|---|
| 14 | |
|---|
| 15 | DESCRIPTION Here you can define which fields (of the origin organism or of the origin gene of |
|---|
| 16 | a gene species) should be transferred to the new database and how they should be |
|---|
| 17 | modified. |
|---|
| 18 | |
|---|
| 19 | To define a new transfer rule, do the following steps: |
|---|
| 20 | |
|---|
| 21 | - Enter name of created field |
|---|
| 22 | |
|---|
| 23 | - Choose a creation method |
|---|
| 24 | |
|---|
| 25 | If you choose 'Copy from organism/gene' you have to provide a 'Source field' |
|---|
| 26 | and you MAY provide an ACI expression. |
|---|
| 27 | |
|---|
| 28 | If you choose 'Only use ACI' you have to provide an ACI expression, but |
|---|
| 29 | no 'Source field'. |
|---|
| 30 | |
|---|
| 31 | - Check if the example shows your intended result. |
|---|
| 32 | |
|---|
| 33 | NOTES The example will be calculated for the gene-species which is selected |
|---|
| 34 | in the left Hitlist of the 'TRANSFER SPECIES' window. |
|---|
| 35 | |
|---|
| 36 | The ACI expression applies to the Organism or the Gene if 'Copy from organism/gene' |
|---|
| 37 | is selected. If 'Only use ACI' is selected it applies to the gene-species. |
|---|
| 38 | |
|---|
| 39 | Note that it is possible to create hierarchical keys. Simply enter something like |
|---|
| 40 | 'organism/full_name' into the destination field. |
|---|
| 41 | |
|---|
| 42 | EXAMPLES None |
|---|
| 43 | |
|---|
| 44 | WARNINGS None |
|---|
| 45 | |
|---|
| 46 | BUGS When you export gene-species to a new database this database is marked as 'Arb-Genome-Database'. |
|---|
| 47 | We need to implement some kind of Database-Admin-Tool to change the database type. |
|---|
| 48 | |
|---|
Note: See
TracBrowser
for help on using the repository browser.
