source: branches/lib/HELP_SOURCE/source/man_arb_edit4.hlp

Last change on this file was 19532, checked in by westram, 4 months ago
  • reintegrates 'help' into 'trunk'
    • tweak arb documentation:
      • automatically link
        • ticket references to arb bug tracker (only affects html version).
        • found URLs.
      • page titles
        • warn about long titles.
        • introduce SUBTITLEs (automatically triggered by multi-line titles in source files).
        • increase allowed length (limited by subwindow width).
      • cleanup header sections in all helpfiles.
      • fix and/or update several help files.
      • document syntax of help sources.
      • build issues:
        • when xml validation fails, next build no longer uses invalid xml ⇒ keeps failing.
        • remove output files on error (including files below ARBHOME/lib).
        • pipe output through logs to ensure proper wrapping in Entering/Leaving lines.
    • moves Tree admin + NDS menu entries to top of menu
  • adds: log:branches/help@18783:19531
  • Property svn:eol-style set to native
  • Property svn:keywords set to Author Date Id Revision
File size: 2.4 KB
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1#       main topics:
2UP      arb.hlp
3UP      manual.hlp
4UP      arb_edit4.hlp
5UP      e4.hlp
6
7#       sub topics:
8#SUB     subtopic.hlp
9
10TITLE           ARB_EDIT4 F.A.Q.
11
12OCCURRENCE      General
13
14NOTE            This file is no longer kept up to date.
15
16                If you don't find an answer here move to LINK{http://arb-home.de/arb_edit.html}.
17
18DESCRIPTION     General Q & A on ARB_EDIT4
19
20
21SECTION How to move around in ARB_EDIT4:
22
23    How to define the alignment detail visualized in the ARB_EDIT4 window?
24
25        Use the scroll bars:
26
27            - click on the triangles to move one position left/right or one line up/down.
28            - drag the "bar" while keeping the left mouse button pressed.
29            - click outside the "bar" to scroll page-wise
30
31        Use the middle mouse button:
32
33            - click inside the alignment, hold the button down and move the pointer
34
35        Use the mouse wheel:
36
37            - move pointer inside alignment and rotate the wheel (optionally with ALT/META)
38
39    How to position the cursor:
40
41            to visualize the editor cursor, position the mouse cursor
42            and press the left button (note: the cursor is placed
43            between the sequences positions; counting is for the
44            position next right to the cursor)
45
46            to move the editor cursor (it has to be placed somewhere
47            before) to a given alignment position type a (position)
48            number in one of the 'Position' (absolute alignment
49            position - characters and gaps), 'E.coli' (homologous
50            position in the E. coli standard), 'Base' (position in the
51            current sequence - only characters, no gaps) or 'Helix #'
52            (5'-end of 3' helix half; type a '-' for 5'-end of the 5'
53            helix half) and move the mouse cursor back to the editing
54            area of the ARB_EDIT4 window.
55
56            to move the editor cursor to the next character (gap
57            symbols neglected) press the 'ctrl' and one of 'right',
58            'left', 'up' or 'down' keys.
59
60    How to compress and uncompress groups?
61
62            click (left mouse button) on the triangle on the top of
63            the group brackets
64
65    How to move sequences?
66
67            ensure the move mode has been activated (by pressing the
68            'MOVE' button; upper most in the left panel of the
69            ARB_EDIT4 window), position the mouse cursor
70
71
72
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