source: branches/lib/HELP_SOURCE/source/mark.hlp

Last change on this file was 19532, checked in by westram, 4 months ago
  • reintegrates 'help' into 'trunk'
    • tweak arb documentation:
      • automatically link
        • ticket references to arb bug tracker (only affects html version).
        • found URLs.
      • page titles
        • warn about long titles.
        • introduce SUBTITLEs (automatically triggered by multi-line titles in source files).
        • increase allowed length (limited by subwindow width).
      • cleanup header sections in all helpfiles.
      • fix and/or update several help files.
      • document syntax of help sources.
      • build issues:
        • when xml validation fails, next build no longer uses invalid xml ⇒ keeps failing.
        • remove output files on error (including files below ARBHOME/lib).
        • pipe output through logs to ensure proper wrapping in Entering/Leaving lines.
    • moves Tree admin + NDS menu entries to top of menu
  • adds: log:branches/help@18783:19531
  • Property svn:eol-style set to native
  • Property svn:keywords set to Author Date Id Revision
File size: 1.4 KB
Line 
1#       main topics:
2UP      arb.hlp
3UP      glossary.hlp
4UP      mode.hlp
5
6#       sub topics:
7SUB     sp_search.hlp
8SUB     species_configs.hlp
9SUB     colorize.hlp
10SUB     mode_mark.hlp
11SUB     sp_mark.hlp
12
13# format described in ../help.readme
14
15
16TITLE           What are Marked Species?
17
18DESCRIPTION     All species have a flag which can be set to FALSE or TRUE.
19                All species with the flag set to TRUE are called marked
20                species. Normally this flag is used to specify a subgroup of
21                species for editors, tree building programs ...
22
23EXAMPLES        Mark one known species:
24
25                        1. Search for the species: <ARB_NT/Species/Search>
26                        2. Select the species
27                        3. Mark it
28
29                Mark a list of species
30
31                        1. Search for the species: <ARB_NT/species/search>
32                        2. Press <Mark Listed/Unmark Rest>
33
34                Mark all species in selected tree:
35
36                        1. Unmark all species: <ARB_NT/species/unmark all sp>
37                        2. <ARB_NT/Species/Mark species/Species in Tree/Mark species in Tree>
38
39                     or
40
41                        1. Select the <MARK MODE>
42                        2. Press the left mouse button somewhere outside the tree.
43
44                Mark a subtree:
45
46                        1. Select the <MARK MODE>
47                        2. Press the left mouse button at a subtree.
48
49                Mark queried species:
50
51                        1. Select 'Search' from the ARB main window
52                        2. Perform a search
53                        3. Use 'Mark Listed Unmark Rest' to mark all queried species
54
55                Save/Restore sets of marked species:
56
57                        see LINK{species_configs.hlp}
58
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