source: branches/lib/HELP_SOURCE/source/nt_tree_marker_settings.hlp

Last change on this file was 19532, checked in by westram, 4 months ago
  • reintegrates 'help' into 'trunk'
    • tweak arb documentation:
      • automatically link
        • ticket references to arb bug tracker (only affects html version).
        • found URLs.
      • page titles
        • warn about long titles.
        • introduce SUBTITLEs (automatically triggered by multi-line titles in source files).
        • increase allowed length (limited by subwindow width).
      • cleanup header sections in all helpfiles.
      • fix and/or update several help files.
      • document syntax of help sources.
      • build issues:
        • when xml validation fails, next build no longer uses invalid xml ⇒ keeps failing.
        • remove output files on error (including files below ARBHOME/lib).
        • pipe output through logs to ensure proper wrapping in Entering/Leaving lines.
    • moves Tree admin + NDS menu entries to top of menu
  • adds: log:branches/help@18783:19531
File size: 1.3 KB
Line 
1#       main topics:
2UP      arb.hlp
3UP      glossary.hlp
4
5#       sub topics:
6#SUB     subtopic.hlp
7
8# format described in ../help.readme
9
10
11TITLE           Tree marker display setup
12
13OCCURRENCE      ARB_NT/Match Probes with Specifity/Display control/Marker display settings
14
15DESCRIPTION     Controls display parameters for markers shown in tree display.
16
17                Currently such markers are available from
18
19                 * LINK{probespec.hlp} and
20                 * LINK{species_configs_highlight.hlp}
21
22                Available parameters:
23
24                 * Group marked threshold
25
26                   defines how many percent of a folded group have to have active markers
27                   in order to show the marker for the group.
28
29                 * Group partially marked threshold
30
31                   defines how many percent of a folded group have to have active markers
32                   in order to show a partial marker for the group.
33                   Partial markers are displayed shaded.
34
35                 * Marker width
36
37                   display width of markers
38
39                 * Partial marker greylevel
40
41                   defines greylevel used to draw partial markers.
42
43
44NOTES           None
45
46EXAMPLES        None
47
48WARNINGS        None
49
50BUGS            No bugs known
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