source: branches/lib/HELP_SOURCE/source/pa_globopti.hlp

Last change on this file was 19532, checked in by westram, 4 months ago
  • reintegrates 'help' into 'trunk'
    • tweak arb documentation:
      • automatically link
        • ticket references to arb bug tracker (only affects html version).
        • found URLs.
      • page titles
        • warn about long titles.
        • introduce SUBTITLEs (automatically triggered by multi-line titles in source files).
        • increase allowed length (limited by subwindow width).
      • cleanup header sections in all helpfiles.
      • fix and/or update several help files.
      • document syntax of help sources.
      • build issues:
        • when xml validation fails, next build no longer uses invalid xml ⇒ keeps failing.
        • remove output files on error (including files below ARBHOME/lib).
        • pipe output through logs to ensure proper wrapping in Entering/Leaving lines.
    • moves Tree admin + NDS menu entries to top of menu
  • adds: log:branches/help@18783:19531
File size: 807 bytes
Line 
1#       main topics:
2UP      arb.hlp
3UP      glossary.hlp
4UP      pa_optimizer.hlp
5
6#       sub topics:
7SUB     mode_optimize.hlp
8
9# format described in ../help.readme
10
11
12TITLE           Global Optimization
13
14OCCURRENCE      ARB_PARSIMONY/Tree/Tree Optimization/Heuristic optimizer
15                ARB_PARSIMONY/<NNI+K.L.-mode-button>
16
17DESCRIPTION     Globally optimizes (parts of) the current tree.
18
19                The global optimization consists of two steps:
20
21                1. LINK{pa_locopti.hlp}
22                2. LINK{pa_kernlin.hlp}
23
24                First step 1. is repeated until no further improvement is found.
25
26                Then step 2. is performed. If an improvement was found, it restarts at step 1.
27                Otherwise the optimization stops.
28
29NOTES           None
30
31EXAMPLES        None
32
33WARNINGS        None
34
35BUGS            No bugs known
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