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Last change
on this file was
19532,
checked in by westram, 4 months ago
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- reintegrates 'help' into 'trunk'
- tweak arb documentation:
- automatically link
- ticket references to arb
 tracker (only affects html version).
- found URLs.
- page titles
- warn about long titles.
- introduce SUBTITLEs (automatically triggered by multi-line titles in source files).
- increase allowed length (limited by subwindow width).
- cleanup header sections in all helpfiles.
- fix and/or update several help files.
- document syntax of help sources.
- build issues:
- when xml validation fails, next build no longer uses invalid xml ⇒ keeps failing.
- remove output files on error (including files below ARBHOME/lib).
- pipe output through logs to ensure proper wrapping in Entering/Leaving lines.
- moves Tree admin + NDS menu entries to top of menu
- adds: log:branches/help@18783:19531
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File size:
1.3 KB
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| 1 | # main topics: |
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| 2 | UP arb.hlp |
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| 3 | UP glossary.hlp |
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| 4 | |
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| 5 | # sub topics: |
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| 6 | #SUB subtopic.hlp |
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| 7 | |
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| 8 | # format described in ../help.readme |
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| 9 | |
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| 10 | |
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| 11 | TITLE Sort tree by other tree |
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| 12 | |
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| 13 | OCCURRENCE ARB_NT/Tree/Beautify tree/By other tree |
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| 14 | |
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| 15 | DESCRIPTION Works similar to LINK{resorttree.hlp}, but here branches are rearranged |
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| 16 | according to the mean position of their leafs in another given tree. |
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| 17 | |
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| 18 | Select the tree you want to use as reference for ordering, |
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| 19 | then click 'Sort according to source tree' to apply the order to |
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| 20 | the currently displayed tree (target tree). |
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| 21 | |
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| 22 | NOTES This also works fine when the source tree DOES NOT contain all species |
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| 23 | of the target tree. Wherever the source tree does not define any ordering, |
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| 24 | the order of the target tree is kept. |
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| 25 | |
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| 26 | This function is e.g. useful after you have added some species to a (copy of a) |
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| 27 | tree and then have optimized the tree: now you may want to sort the copied tree |
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| 28 | according to the original tree. That reduces the unwanted re-ordering caused by |
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| 29 | tree-optimization, without affecting the topology. |
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| 30 | |
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| 31 | If you call the function several times with different source trees, the last |
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| 32 | call will be most dominant. Ordering effects of foregoing calls will |
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| 33 | remain in tree-regions uncovered by source-trees used in subsequent calls. |
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| 34 | |
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| 35 | EXAMPLES None |
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| 36 | |
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| 37 | WARNINGS None |
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| 38 | |
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| 39 | BUGS No bugs known |
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