source: branches/lib/HELP_SOURCE/source/saiProbe.hlp

Last change on this file was 19532, checked in by westram, 4 months ago
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1#       main topics:
2UP      arb.hlp
3UP      glossary.hlp
4UP      extended.hlp
5
6#       sub topics:
7SUB     accessibility_sai.hlp
8SUB     displayField.hlp
9
10# format described in ../help.readme
11
12
13TITLE          Visualize SAIs at probe match targets.
14
15OCCURRENCE     ARB_NT/Probes/Match Probes/Match SAI
16
17DESCRIPTION
18
19    This window aides the visualization of SAIs (sequence associated information) of the
20    potential probe targets that were designed (see LINK{probedesign.hlp})
21    and matched (see LINK{probematch.hlp}).
22
23    Steps to be followed to VISUALIZE SAIs for the Potential Probe Targets:
24
25          1. Select SAI to be visualized from the Select SAI Menu. (Properties/Select SAI)
26
27          2. Define desired background colors (COLOR 0 to COLOR 9)
28             to be used to indicate the CHARACTERS/DIGITS (occurring in the selected SAI).
29             These colors will be painted as background of the Probe target list.
30             (configure via Properties/Define Color Translations)
31
32          3. Values or characters contained in the SAIs selected can also be displayed
33             below each Probe Targets by selecting the 'DISPLAY SAI' check box
34             in 'Color Translation Table' window.
35
36          4. Once the desired SAI is selected and the respective color translation is
37             defined, the SAI is painted as the background of the probe targets in the
38             defined color ranges with respect to SAIs.
39
40    One can change the COLOR RANGE by going to 'Properties/Set Colors and Fonts' menu.
41
42NOTES
43
44    Color translation definitions defined for various SAIs can be saved by clicking the
45    config manager button in the DEFINE COLOR TRANSLATION window.
46
47    To save the color translation definitions permanently, you need to
48    save properties afterwards (from ARB main window / Properties).
49
50EXAMPLES        None
51
52WARNINGS        None
53
54BUGS            No bugs known
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