source: branches/lib/HELP_SOURCE/source/trans_anal.hlp

Last change on this file was 19532, checked in by westram, 4 months ago
  • reintegrates 'help' into 'trunk'
    • tweak arb documentation:
      • automatically link
        • ticket references to arb bug tracker (only affects html version).
        • found URLs.
      • page titles
        • warn about long titles.
        • introduce SUBTITLEs (automatically triggered by multi-line titles in source files).
        • increase allowed length (limited by subwindow width).
      • cleanup header sections in all helpfiles.
      • fix and/or update several help files.
      • document syntax of help sources.
      • build issues:
        • when xml validation fails, next build no longer uses invalid xml ⇒ keeps failing.
        • remove output files on error (including files below ARBHOME/lib).
        • pipe output through logs to ensure proper wrapping in Entering/Leaving lines.
    • moves Tree admin + NDS menu entries to top of menu
  • adds: log:branches/help@18783:19531
  • Property svn:eol-style set to native
  • Property svn:keywords set to Author Date Id Revision
File size: 625 bytes
Line 
1#       main topics:
2UP      arb.hlp
3UP      glossary.hlp
4UP      sel_fil.hlp
5
6#       sub topics:
7#SUB     subtopic.hlp
8
9# format described in ../help.readme
10
11
12TITLE           Transversion analysis
13
14OCCURRENCE      in all filter windows
15
16DESCRIPTION     There is no special transversion analysis. But using the filter
17                nearly all programs allow to convert DNA/RNA sequences to
18                A/G sequences on the fly, simply by using a filter and
19                setting the <simplify your data> selector to TRANSVERSIONS ONLY
20
21NOTES           None   
22
23EXAMPLES        None
24
25WARNINGS        Don't use the Jukes Cantor distance transformation, use
26                Felsenstein instead
27
28BUGS            maybe/ maybe not
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