source: branches/lib/HELP_SOURCE/source/transl_table.hlp

Last change on this file was 19532, checked in by westram, 4 months ago
  • reintegrates 'help' into 'trunk'
    • tweak arb documentation:
      • automatically link
        • ticket references to arb bug tracker (only affects html version).
        • found URLs.
      • page titles
        • warn about long titles.
        • introduce SUBTITLEs (automatically triggered by multi-line titles in source files).
        • increase allowed length (limited by subwindow width).
      • cleanup header sections in all helpfiles.
      • fix and/or update several help files.
      • document syntax of help sources.
      • build issues:
        • when xml validation fails, next build no longer uses invalid xml ⇒ keeps failing.
        • remove output files on error (including files below ARBHOME/lib).
        • pipe output through logs to ensure proper wrapping in Entering/Leaving lines.
    • moves Tree admin + NDS menu entries to top of menu
  • adds: log:branches/help@18783:19531
File size: 1.3 KB
Line 
1#       main topics:
2UP      arb.hlp
3UP      glossary.hlp
4
5#       sub topics:
6SUB     translate_dna_2_pro.hlp
7SUB     proteinViewer.hlp
8
9# format described in ../help.readme
10
11
12TITLE           Translation tables
13
14DESCRIPTION     Translation tables are also referred to as 'Codon tables' or 'Genetic codes'.
15
16                ARB currently knows the translation tables as defined by
17                LINK{https://www.ncbi.nlm.nih.gov/Taxonomy/Utils/wprintgc.cgi}
18                (last update of the Genetic Codes: Nov. 18, 2016)
19#               LAST_UPDATE_FROM_WEBPAGE
20
21                ARB uses a database field called 'transl_table' which contains the
22                genetic code number. It normally occurs together with 'codon_start' in
23                  * species (see LINK{realign_dna.hlp}) or
24                  * gene (see LINK{genes.hlp})
25
26NOTES           'Mold/Protozoan/Coelenterate Mitochondrial Code' and
27                'Mycoplasma/Spiroplasma Code' are identical (genetic code 4).
28                For that reason the latter has been removed and the combined name
29                has been abbreviated as 'Coelenterate Mitochondrial + Mycoplasma/Spiroplasma'.
30
31                Please note LINK{aaali.hlp}
32
33EXAMPLES        None
34
35WARNINGS        None
36
37BUGS            No bugs known
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