|
Last change
on this file was
19409,
checked in by westram, 2 years ago
|
- mostly cosmetic changes to SEQ_QUALITY:
- compact else-if cascades.
- avoid using abs() repeatedly in cascades
- unwrap lines.
- use GB_end_transaction.
- whitespace fixes.
|
-
Property svn:eol-style set to
native
-
Property svn:keywords set to
Author Date Id Revision
|
|
File size:
1.5 KB
|
| Line | |
|---|
| 1 | // ==================================================================== // |
|---|
| 2 | // // |
|---|
| 3 | // File : SQ_ambiguities.h // |
|---|
| 4 | // Purpose : Class used for evaluation of iupac ambiguities // |
|---|
| 5 | // // |
|---|
| 6 | // // |
|---|
| 7 | // Coded by Juergen Huber in July 2003 - February 2004 // |
|---|
| 8 | // Coded by Kai Bader (baderk@in.tum.de) in 2007 - 2008 // |
|---|
| 9 | // Copyright Department of Microbiology (Technical University Munich) // |
|---|
| 10 | // // |
|---|
| 11 | // Visit our web site at: http://www.arb-home.de/ // |
|---|
| 12 | // // |
|---|
| 13 | // ==================================================================== // |
|---|
| 14 | |
|---|
| 15 | #ifndef ARBDB_BASE_H |
|---|
| 16 | #include <arbdb_base.h> |
|---|
| 17 | #endif |
|---|
| 18 | |
|---|
| 19 | #define seq_assert(bed) arb_assert(bed) |
|---|
| 20 | |
|---|
| 21 | class SQ_ambiguities { |
|---|
| 22 | int number; |
|---|
| 23 | int percent; |
|---|
| 24 | int iupac_value; |
|---|
| 25 | |
|---|
| 26 | public: |
|---|
| 27 | SQ_ambiguities() : |
|---|
| 28 | number(0), |
|---|
| 29 | percent(0), |
|---|
| 30 | iupac_value(0) |
|---|
| 31 | {} |
|---|
| 32 | |
|---|
| 33 | void SQ_count_ambiguities(const char *iupac, int length, GBDATA *gb_quality); |
|---|
| 34 | |
|---|
| 35 | int SQ_get_nr_ambiguities() const { return number; } |
|---|
| 36 | int SQ_get_percent_ambiguities() const { return percent; } |
|---|
| 37 | int SQ_get_iupac_value() const { return iupac_value; } |
|---|
| 38 | }; |
|---|
| 39 | |
|---|
Note: See
TracBrowser
for help on using the repository browser.
