|
Last change
on this file was
11401,
checked in by westram, 12 years ago
|
- reintegrates '
 ' into 'trunk':
- consensus trees:
- support for merging partial trees ("worked" before, but results were crap; implements #65)
- generated trees are automatically re-rooted and -ordered
- always list source trees in consensus--comment; show info about partial trees
- fixed progress bar
- made GBT_TREE a base class of other classes (implements #31)
- save properties in properties (not in
 )
- new functions 'Remove zombies/marked from ALL trees'
- load/save: layout fixes
- unit tests
- added tests for basic modifications (PARSIMONY)
- performance:
- compute_tree updates information in one traversal
- generators are now capable to generate any type of (w/o needing to copy it once)
- bugfixes:
- NNI (of marked species) was also always performed for colored species
- centered beautify-order is stable now
- improved 'search optimal root'
- adds:
|
|
File size:
1.5 KB
|
| Line | |
|---|
| 1 | [Tue Dec 24 10:57:18 2013: ARB consensus tree build from 5 trees: |
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| 2 | - consense/1/bootstrapped_1.tree |
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| 3 | - consense/1/bootstrapped_2.tree |
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| 4 | - consense/1/bootstrapped_3.tree |
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| 5 | - consense/1/bootstrapped_4.tree |
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| 6 | - consense/1/bootstrapped_5.tree |
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| 7 | Tue Dec 24 10:57:18 2013: tree_consense1 saved to consense/1/consense1.tree |
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| 8 | ] |
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| 9 | ( |
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| 10 | ( |
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| 11 | CloProte:0.03930, |
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| 12 | ( |
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| 13 | CloTyrob:0.04516, |
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| 14 | ( |
|---|
| 15 | ( |
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| 16 | CloTetan:0.03436, |
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| 17 | ( |
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| 18 | CloColla:0.02992, |
|---|
| 19 | CloSardi:0.02309 |
|---|
| 20 | ):0.00969 |
|---|
| 21 | )60:0.00394, |
|---|
| 22 | ( |
|---|
| 23 | CloCellu:0.03198, |
|---|
| 24 | ( |
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| 25 | CloPerfr:0.03026, |
|---|
| 26 | ( |
|---|
| 27 | CloParap:0.02139, |
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| 28 | ( |
|---|
| 29 | CloBotul:0.01636, |
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| 30 | CloCorin:0.01812 |
|---|
| 31 | ):0.00908 |
|---|
| 32 | ):0.00458 |
|---|
| 33 | )80:0.00803 |
|---|
| 34 | )80:0.00488 |
|---|
| 35 | )80:0.00536 |
|---|
| 36 | ):0.00673 |
|---|
| 37 | ):0.02885, |
|---|
| 38 | ( |
|---|
| 39 | ( |
|---|
| 40 | LccL2279:0.05363, |
|---|
| 41 | StcSaliv:0.05211 |
|---|
| 42 | ):0.02116, |
|---|
| 43 | ( |
|---|
| 44 | ( |
|---|
| 45 | BclGlob2:0.04631, |
|---|
| 46 | ( |
|---|
| 47 | StaAureu:0.00922, |
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| 48 | ( |
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| 49 | StaHaemo:0.00435, |
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| 50 | StaHomin:0.00443 |
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| 51 | ):0.00457 |
|---|
| 52 | ):0.04171 |
|---|
| 53 | ):0.01408, |
|---|
| 54 | ( |
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| 55 | CrnAlter:0.04672, |
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| 56 | ( |
|---|
| 57 | ( |
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| 58 | LcbFruct:0.02068, |
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| 59 | LcbSanfr:0.03093 |
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| 60 | ):0.02053, |
|---|
| 61 | ( |
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| 62 | LcbA1923:0.05320, |
|---|
| 63 | ( |
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| 64 | LcbPont2:0.01727, |
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| 65 | LcbReu40:0.01861 |
|---|
| 66 | ):0.03149 |
|---|
| 67 | )60:0.00330 |
|---|
| 68 | ):0.01871 |
|---|
| 69 | )60:0.00391 |
|---|
| 70 | )60:0.00893 |
|---|
| 71 | ):0.02885 |
|---|
| 72 | ); |
|---|
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