|
Last change
on this file was
11401,
checked in by westram, 12 years ago
|
- reintegrates '
 ' into 'trunk':
- consensus trees:
- support for merging partial trees ("worked" before, but results were crap; implements #65)
- generated trees are automatically re-rooted and -ordered
- always list source trees in consensus--comment; show info about partial trees
- fixed progress bar
- made GBT_TREE a base class of other classes (implements #31)
- save properties in properties (not in
 )
- new functions 'Remove zombies/marked from ALL trees'
- load/save: layout fixes
- unit tests
- added tests for basic modifications (PARSIMONY)
- performance:
- compute_tree updates information in one traversal
- generators are now capable to generate any type of (w/o needing to copy it once)
- bugfixes:
- NNI (of marked species) was also always performed for colored species
- centered beautify-order is stable now
- improved 'search optimal root'
- adds:
|
|
File size:
1.3 KB
|
| Line | |
|---|
| 1 | [Tue Dec 24 10:57:18 2013: ARB consensus tree build from 1 trees: |
|---|
| 2 | - consense/1/bootstrapped_1.tree |
|---|
| 3 | Tue Dec 24 10:57:18 2013: tree_consense1_single saved to consense/1/consense1_single.tree |
|---|
| 4 | ] |
|---|
| 5 | ( |
|---|
| 6 | ( |
|---|
| 7 | CloProte:0.04424, |
|---|
| 8 | ( |
|---|
| 9 | CloTyrob:0.04432, |
|---|
| 10 | ( |
|---|
| 11 | ( |
|---|
| 12 | CloTetan:0.03360, |
|---|
| 13 | ( |
|---|
| 14 | CloColla:0.03223, |
|---|
| 15 | CloSardi:0.02828 |
|---|
| 16 | ):0.00816 |
|---|
| 17 | ):0.00282, |
|---|
| 18 | ( |
|---|
| 19 | CloCellu:0.03223, |
|---|
| 20 | ( |
|---|
| 21 | CloPerfr:0.02995, |
|---|
| 22 | ( |
|---|
| 23 | CloParap:0.02518, |
|---|
| 24 | ( |
|---|
| 25 | CloBotul:0.01776, |
|---|
| 26 | CloCorin:0.02067 |
|---|
| 27 | ):0.01240 |
|---|
| 28 | ):0.00175 |
|---|
| 29 | ):0.01270 |
|---|
| 30 | ):0.00361 |
|---|
| 31 | ):0.00522 |
|---|
| 32 | ):0.00692 |
|---|
| 33 | ):0.02688, |
|---|
| 34 | ( |
|---|
| 35 | ( |
|---|
| 36 | CrnAlter:0.04598, |
|---|
| 37 | ( |
|---|
| 38 | LccL2279:0.05873, |
|---|
| 39 | StcSaliv:0.05190 |
|---|
| 40 | ):0.01590 |
|---|
| 41 | ):0.00462, |
|---|
| 42 | ( |
|---|
| 43 | ( |
|---|
| 44 | BclGlob2:0.04020, |
|---|
| 45 | ( |
|---|
| 46 | StaAureu:0.00766, |
|---|
| 47 | ( |
|---|
| 48 | StaHaemo:0.00491, |
|---|
| 49 | StaHomin:0.00434 |
|---|
| 50 | ):0.00343 |
|---|
| 51 | ):0.04354 |
|---|
| 52 | ):0.01165, |
|---|
| 53 | ( |
|---|
| 54 | LcbA1923:0.05341, |
|---|
| 55 | ( |
|---|
| 56 | ( |
|---|
| 57 | LcbFruct:0.02150, |
|---|
| 58 | LcbSanfr:0.03225 |
|---|
| 59 | ):0.01134, |
|---|
| 60 | ( |
|---|
| 61 | LcbPont2:0.01442, |
|---|
| 62 | LcbReu40:0.01407 |
|---|
| 63 | ):0.03915 |
|---|
| 64 | ):0.00558 |
|---|
| 65 | ):0.01874 |
|---|
| 66 | ):0.00549 |
|---|
| 67 | ):0.02688 |
|---|
| 68 | ); |
|---|
Note: See
TracBrowser
for help on using the repository browser.
