|
Last change
on this file was
12014,
checked in by westram, 12 years ago
|
- reintegrates 'fix' into 'trunk'
- slightly changes consensus
generation
- adds:
|
|
File size:
15.8 KB
|
| Line | |
|---|
| 1 | [Sun Apr 13 13:55:19 2014: ARB consensus tree build from 3 trees: |
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| 2 | - consense/3/bootstrapped_1.tree |
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| 3 | - consense/3/bootstrapped_2.tree |
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| 4 | - consense/3/bootstrapped_3.tree |
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| 5 | Sun Apr 13 13:55:19 2014: tree_consense3 saved to consense/3/consense3.tree |
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| 6 | ] |
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| 7 | ( |
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| 8 | ( |
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| 9 | MhuCaps3:0.06451, |
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| 10 | ThtNivea:0.06440 |
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| 11 | ):0.03606, |
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| 12 | ( |
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| 13 | ( |
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| 14 | LbnAlexa:0.00947, |
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| 15 | ( |
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| 16 | LbnMarin:0.00681, |
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| 17 | LbnzAlb4:0.00334 |
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| 18 | ):0.00562 |
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| 19 | ):0.04237, |
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| 20 | ( |
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| 21 | ( |
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| 22 | RblTherm:0.03006, |
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| 23 | ( |
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| 24 | RblAerol:0.02420, |
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| 25 | RblMesop:0.01513 |
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| 26 | ):0.01019 |
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| 27 | ):0.02968, |
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| 28 | ( |
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| 29 | LokPyose:0.03212, |
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| 30 | ( |
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| 31 | RclMahon:0.03361, |
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| 32 | ( |
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| 33 | ( |
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| 34 | DnrShiba:0.02516, |
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| 35 | RsbElon4:0.01905 |
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| 36 | ):0.01036, |
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| 37 | ( |
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| 38 | ( |
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| 39 | MmbAlkal:0.02320, |
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| 40 | ( |
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| 41 | ( |
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| 42 | MabPelag:0.00053, |
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| 43 | MabSalin:0.00205 |
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| 44 | ):0.03337, |
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| 45 | ( |
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| 46 | OnlBats2:0.01587, |
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| 47 | OnlNanha:0.02374 |
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| 48 | )67:0.00654 |
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| 49 | )33:0.00123 |
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| 50 | )33:0.00466, |
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| 51 | ( |
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| 52 | ( |
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| 53 | AttHeli2:0.02838, |
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| 54 | SgtStel2:0.02516 |
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| 55 | ):0.01053, |
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| 56 | ( |
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| 57 | ( |
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| 58 | DonEburn:0.01845, |
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| 59 | ( |
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| 60 | ( |
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| 61 | MrvAlgi3:0.01485, |
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| 62 | ( |
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| 63 | PaoMaris:0.02766, |
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| 64 | ( |
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| 65 | PgbBermu:0.00909, |
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| 66 | SlpMuco2:0.01821 |
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| 67 | ):0.00711 |
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| 68 | )67:0.00470 |
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| 69 | )33:0.00328, |
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| 70 | ( |
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| 71 | ( |
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| 72 | OnlSpec4:0.01775, |
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| 73 | RueSpe48:0.01507 |
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| 74 | )67:0.00772, |
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| 75 | ( |
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| 76 | TscHalod:0.02143, |
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| 77 | ( |
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| 78 | RsxSpec6:0.01064, |
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| 79 | ( |
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| 80 | RsxHalo2:0.01825, |
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| 81 | ( |
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| 82 | CiaSalin:0.02048, |
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| 83 | RsxHalo3:0.02530 |
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| 84 | )67:0.00687 |
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| 85 | )67:0.00494 |
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| 86 | )33:0.00743 |
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| 87 | )33:0.00282 |
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| 88 | )33:0.00213 |
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| 89 | )33:0.00359 |
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| 90 | )33:0.00394, |
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| 91 | ( |
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| 92 | ( |
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| 93 | ( |
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| 94 | ShaMarin:0.00789, |
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| 95 | ShaSpeci:0.01094 |
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| 96 | ):0.00997, |
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| 97 | ( |
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| 98 | ( |
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| 99 | PhbSpe37:0.02020, |
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| 100 | ( |
|---|
| 101 | ( |
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| 102 | YanPacif:0.01593, |
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| 103 | ( |
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| 104 | CieSpec9:0.01551, |
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| 105 | ( |
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| 106 | CieThioo:0.00091, |
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| 107 | MrnAlp10:0.00077 |
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| 108 | ):0.01289 |
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| 109 | )67:0.00625 |
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| 110 | )67:0.00744, |
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| 111 | ( |
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| 112 | ( |
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| 113 | PhbArcti:0.02157, |
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| 114 | PhbGall5:0.00994 |
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| 115 | )67:0.00543, |
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| 116 | ( |
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| 117 | ( |
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| 118 | LsnAquim:0.00435, |
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| 119 | LsnMeth2:0.00717 |
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| 120 | ):0.00582, |
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| 121 | ( |
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| 122 | MrnAlp12:0.01117, |
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| 123 | PhbCaeru:0.00816 |
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| 124 | )67:0.00667 |
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| 125 | )67:0.00345 |
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| 126 | )67:0.00275 |
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| 127 | )33:0.00116 |
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| 128 | )33:0.00577, |
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| 129 | ( |
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| 130 | ( |
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| 131 | RsrSpec6:0.02562, |
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| 132 | ( |
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| 133 | ( |
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| 134 | RosSpe24:0.01242, |
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| 135 | RosSpe86:0.01095 |
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| 136 | ):0.01226, |
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| 137 | ( |
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| 138 | ( |
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| 139 | RsrAestu:0.01053, |
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| 140 | RsrNubi2:0.01765 |
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| 141 | ):0.00290, |
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| 142 | ( |
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| 143 | RsrTole2:0.01450, |
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| 144 | ( |
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| 145 | RosSpe15:0.00133, |
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| 146 | RsrMucos:0.00353 |
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| 147 | ):0.01719 |
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| 148 | ):0.01321 |
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| 149 | )33:0.00123 |
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| 150 | )67:0.00329 |
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| 151 | )67:0.00481, |
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| 152 | ( |
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| 153 | RueSpe62:0.01744, |
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| 154 | ( |
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| 155 | ( |
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| 156 | PdgAquim:0.00899, |
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| 157 | PdgSpec5:0.02418 |
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| 158 | ):0.00908, |
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| 159 | ( |
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| 160 | ( |
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| 161 | RueMobi3:0.00436, |
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| 162 | ( |
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| 163 | RueSpe54:0.00000, |
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| 164 | RueSpe56:-0.00000 |
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| 165 | ):0.00167 |
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| 166 | ):0.01328, |
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| 167 | ( |
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| 168 | SbtPomer:0.01546, |
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| 169 | ( |
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| 170 | RueAtla7:0.00465, |
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| 171 | ( |
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| 172 | RhbBac48:0.00951, |
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| 173 | SbtLacus:0.00857 |
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| 174 | )67:0.00237 |
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| 175 | ):0.00423 |
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| 176 | )67:0.00118 |
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| 177 | )67:0.00410 |
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| 178 | )67:0.00395 |
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| 179 | )67:0.00532 |
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| 180 | )33:0.00219 |
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| 181 | )33:0.00271 |
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| 182 | )33:0.00144, |
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| 183 | ( |
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| 184 | ( |
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| 185 | ( |
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| 186 | TlbSten4:0.02121, |
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| 187 | ( |
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| 188 | OcdSpec8:0.01591, |
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| 189 | ( |
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| 190 | OcdOrien:0.00695, |
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| 191 | TlbArena:0.00627 |
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| 192 | )67:0.00458 |
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| 193 | ):0.00807 |
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| 194 | )33:0.00506, |
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| 195 | ( |
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| 196 | RsrCrass:0.01889, |
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| 197 | ( |
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| 198 | JnnSpec8:0.02355, |
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| 199 | ( |
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| 200 | JnnDongh:0.01678, |
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| 201 | ( |
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| 202 | JnnPohan:0.01328, |
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| 203 | ( |
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| 204 | ( |
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| 205 | JnnHelg4:0.00683, |
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| 206 | JnnRubr2:0.00805 |
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| 207 | ):0.00959, |
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| 208 | ( |
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| 209 | JnnSeoha:0.01912, |
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| 210 | JnnSeosi:0.01499 |
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| 211 | )67:0.00378 |
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| 212 | )67:0.00344 |
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| 213 | )67:0.00137 |
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| 214 | ):0.00428 |
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| 215 | ):0.00447 |
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| 216 | )33:0.00277 |
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| 217 | )33:0.00416, |
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| 218 | ( |
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| 219 | ( |
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| 220 | NerIgna3:0.02975, |
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| 221 | ( |
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| 222 | ( |
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| 223 | RosDeni2:0.01109, |
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| 224 | ( |
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| 225 | RosLito2:0.00173, |
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| 226 | RosLito8:0.00060 |
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| 227 | ):0.00616 |
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| 228 | ):0.01163, |
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| 229 | ( |
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| 230 | SltGutt2:0.01570, |
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| 231 | ( |
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| 232 | ( |
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| 233 | ( |
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| 234 | OcbIndo3:0.00066, |
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| 235 | SltSpe32:0.00006 |
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| 236 | ):0.00196, |
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| 237 | ( |
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| 238 | SltDeli3:0.00365, |
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| 239 | SltDubi2:0.00130 |
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| 240 | )67:0.00112 |
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| 241 | ):0.01337, |
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| 242 | ( |
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| 243 | SltMedi2:0.00576, |
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| 244 | ( |
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| 245 | SltBrev2:0.01081, |
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| 246 | ( |
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| 247 | SltPont3:-0.00002, |
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| 248 | ( |
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| 249 | BcrNAS14:0.00035, |
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| 250 | SltSpe43:-0.00034 |
|---|
| 251 | )67:0.00098 |
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| 252 | ):0.00540 |
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| 253 | )67:0.00146 |
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| 254 | ):0.00263 |
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| 255 | )33:0.00431 |
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| 256 | )67:0.00114 |
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| 257 | ):0.00595 |
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| 258 | )67:0.00303, |
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| 259 | ( |
|---|
| 260 | ( |
|---|
| 261 | ( |
|---|
| 262 | OnlGran2:0.02000, |
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| 263 | RsnAnta2:0.02243 |
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| 264 | )67:0.00850, |
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| 265 | ( |
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| 266 | LokRosea:0.01947, |
|---|
| 267 | ( |
|---|
| 268 | ( |
|---|
| 269 | LokAgnit:0.01279, |
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| 270 | LokVest4:0.01540 |
|---|
| 271 | ):0.01034, |
|---|
| 272 | ( |
|---|
| 273 | LokFryx2:0.00617, |
|---|
| 274 | LokSals5:0.00594 |
|---|
| 275 | ):0.02174 |
|---|
| 276 | )67:0.00335 |
|---|
| 277 | ):0.01040 |
|---|
| 278 | )33:0.00916, |
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| 279 | ( |
|---|
| 280 | ( |
|---|
| 281 | TlsAestu:0.01418, |
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| 282 | ( |
|---|
| 283 | TlsGela3:0.00867, |
|---|
| 284 | TlsMedi4:0.01553 |
|---|
| 285 | )67:0.00537 |
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| 286 | ):0.00821, |
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| 287 | ( |
|---|
| 288 | OcdSpec4:0.02448, |
|---|
| 289 | ( |
|---|
| 290 | ( |
|---|
| 291 | OcdSpe18:0.00988, |
|---|
| 292 | ( |
|---|
| 293 | OcdSpe19:0.00059, |
|---|
| 294 | OcdSpe21:-0.00059 |
|---|
| 295 | ):0.00611 |
|---|
| 296 | )67:0.00504, |
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| 297 | ( |
|---|
| 298 | OcdSpec6:0.01090, |
|---|
| 299 | ( |
|---|
| 300 | Unc00rpc:0.00147, |
|---|
| 301 | ( |
|---|
| 302 | Unc03dtr:0.00135, |
|---|
| 303 | ( |
|---|
| 304 | OcdSpe11:-0.00013, |
|---|
| 305 | ( |
|---|
| 306 | ( |
|---|
| 307 | AticSea9:-0.00027, |
|---|
| 308 | ( |
|---|
| 309 | AticSe10:-0.00022, |
|---|
| 310 | ( |
|---|
| 311 | OcdSpec9:0.00233, |
|---|
| 312 | Unc03nea:-0.00116 |
|---|
| 313 | ):0.00067 |
|---|
| 314 | )33:0.00026 |
|---|
| 315 | )33:0.00005, |
|---|
| 316 | ( |
|---|
| 317 | OcdSpec2:-0.00024, |
|---|
| 318 | ( |
|---|
| 319 | AticSea6:0.00035, |
|---|
| 320 | ( |
|---|
| 321 | OcdSpeci:-0.00030, |
|---|
| 322 | ( |
|---|
| 323 | AticSea7:-0.00012, |
|---|
| 324 | ( |
|---|
| 325 | OcdSpec3:-0.00023, |
|---|
| 326 | ( |
|---|
| 327 | AticSe15:-0.00005, |
|---|
| 328 | ( |
|---|
| 329 | OcdSpec5:-0.00000, |
|---|
| 330 | ( |
|---|
| 331 | OcdSpe15:-0.00000, |
|---|
| 332 | ( |
|---|
| 333 | OcdSpe13:0.00000, |
|---|
| 334 | ( |
|---|
| 335 | AticSe36:-0.00000, |
|---|
| 336 | ( |
|---|
| 337 | ( |
|---|
| 338 | AticSe32:-0.00000, |
|---|
| 339 | OcdSpe10:-0.00001 |
|---|
| 340 | ):0.00000, |
|---|
| 341 | ( |
|---|
| 342 | OcdSpe12:-0.00001, |
|---|
| 343 | ( |
|---|
| 344 | AticSe25:-0.00010, |
|---|
| 345 | ( |
|---|
| 346 | AticSe29:-0.00010, |
|---|
| 347 | ( |
|---|
| 348 | AticSe30:0.00178, |
|---|
| 349 | ( |
|---|
| 350 | AticSe28:0.00074, |
|---|
| 351 | AticSe33:0.00017 |
|---|
| 352 | )33:0.00015 |
|---|
| 353 | )67:0.00013 |
|---|
| 354 | )33:0.00014 |
|---|
| 355 | )33:0.00008 |
|---|
| 356 | ):0.00000 |
|---|
| 357 | ):0.00000 |
|---|
| 358 | )33:0.00000 |
|---|
| 359 | )33:0.00000 |
|---|
| 360 | )33:0.00000 |
|---|
| 361 | )33:0.00000 |
|---|
| 362 | )33:0.00001 |
|---|
| 363 | ):0.00000 |
|---|
| 364 | )33:0.00001 |
|---|
| 365 | )33:0.00006 |
|---|
| 366 | )33:0.00009 |
|---|
| 367 | )33:0.00005 |
|---|
| 368 | )33:0.00019 |
|---|
| 369 | ):0.00013 |
|---|
| 370 | ):0.00155 |
|---|
| 371 | )67:0.00076 |
|---|
| 372 | ):0.00909 |
|---|
| 373 | )33:0.00213 |
|---|
| 374 | ):0.00603 |
|---|
| 375 | )67:0.00411 |
|---|
| 376 | )33:0.00278 |
|---|
| 377 | )33:0.00110 |
|---|
| 378 | )33:0.00353 |
|---|
| 379 | )33:0.00125 |
|---|
| 380 | )33:0.00093 |
|---|
| 381 | )33:0.00368 |
|---|
| 382 | )67:0.00255 |
|---|
| 383 | )67:0.00343 |
|---|
| 384 | )67:0.00445 |
|---|
| 385 | )67:0.00864 |
|---|
| 386 | ):0.02634 |
|---|
| 387 | ):0.03606 |
|---|
| 388 | ); |
|---|
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