| Line | |
|---|
| 1 | /*ARBDB ASCII*/ |
|---|
| 2 | species_data %% (% |
|---|
| 3 | species :5000 %% (% |
|---|
| 4 | name :7600 "MycTuber" |
|---|
| 5 | acc "S45301 X58890" |
|---|
| 6 | full_name :4400 "Mycobacterium tuberculosis " |
|---|
| 7 | %) /*species*/ |
|---|
| 8 | |
|---|
| 9 | species :5000 %% (% |
|---|
| 10 | name :7600 "MycLepra" |
|---|
| 11 | acc "X53999" |
|---|
| 12 | full_name :4400 "Mycobacterium leprae" |
|---|
| 13 | %) /*species*/ |
|---|
| 14 | |
|---|
| 15 | species :5000 %% (% |
|---|
| 16 | name :7600 "MycChlor" |
|---|
| 17 | acc "X79094" |
|---|
| 18 | full_name :4400 "Mycobacterium chlorophenolicus" |
|---|
| 19 | %) /*species*/ |
|---|
| 20 | |
|---|
| 21 | species :5000 %% (% |
|---|
| 22 | name :7600 "ActUtahe" |
|---|
| 23 | acc "X80823" |
|---|
| 24 | comment "comment" |
|---|
| 25 | full_name "Act;ino\tplanes uta,hen.sis\n" |
|---|
| 26 | %) /*species*/ |
|---|
| 27 | |
|---|
| 28 | species :5000 %% (% |
|---|
| 29 | name :7600 "BifBifid" |
|---|
| 30 | acc "S83624" |
|---|
| 31 | full_name :4400 "Bifidobacterium bifidum " |
|---|
| 32 | %) /*species*/ |
|---|
| 33 | |
|---|
| 34 | species :5000 %% (% |
|---|
| 35 | name :7600 "ClavXyli" |
|---|
| 36 | acc "M60935" |
|---|
| 37 | full_name :4400 "Clavibacter xyli " |
|---|
| 38 | %) /*species*/ |
|---|
| 39 | |
|---|
| 40 | species :5000 %% (% |
|---|
| 41 | name :7600 "StpGrise" |
|---|
| 42 | acc "M76388 X55435 X61478" |
|---|
| 43 | full_name :4400 "Streptomyces griseus" |
|---|
| 44 | %) /*species*/ |
|---|
| 45 | |
|---|
| 46 | species :5000 %% (% |
|---|
| 47 | name :7600 "StpAmbof" |
|---|
| 48 | acc "M27245" |
|---|
| 49 | comment "This is the comment for StpAmbof :-)" |
|---|
| 50 | full_name :4400 "Streptomyces ambofaciens nomen falsus longus abscindere" |
|---|
| 51 | %) /*species*/ |
|---|
| 52 | |
|---|
| 53 | species :5000 %% (% |
|---|
| 54 | name :7600 "FraSpeci" |
|---|
| 55 | acc "M88466" |
|---|
| 56 | full_name :4400 "Frankia species" |
|---|
| 57 | %) /*species*/ |
|---|
| 58 | |
|---|
| 59 | %) /*species_data*/ |
|---|
| 60 | |
|---|
| 61 | tree_data %% (% |
|---|
| 62 | tree_pars %% (% |
|---|
| 63 | tree "N0.00564972,0.0608575;N0.00757217,0.0338983;N0.0917852,0.00956938;N0.0650995,0.0217195;N0.019678,0.00626118;LMycLepra\ALMycTuber\ALMycChlor\AN0.0685558,0.0720803;LActUtahe\ALFraSpeci\AN0.160326,0.0886076;LBifBifid\ALClavXyli\AN0.0359712,0.029703;LStpAmbof\ALStpGrise\A" |
|---|
| 64 | nnodes %i 8 |
|---|
| 65 | remark "PRG=dnadist CORR=jukes_cantor FILTER=POS_VAR_BY_PARSIMONY PKG=ARB\n[created as copy of 'tree_NJ']" |
|---|
| 66 | security %i 0 |
|---|
| 67 | ruler %% (% |
|---|
| 68 | size %f 0.1 |
|---|
| 69 | LIST %% (% |
|---|
| 70 | ruler_y %f 0 |
|---|
| 71 | ruler_x %f 0 |
|---|
| 72 | text_x %f 0 |
|---|
| 73 | text_y %f 0 |
|---|
| 74 | %) /*LIST*/ |
|---|
| 75 | |
|---|
| 76 | ruler_width %i 0 |
|---|
| 77 | %) /*ruler*/ |
|---|
| 78 | |
|---|
| 79 | order %i 2 |
|---|
| 80 | %) /*tree_pars*/ |
|---|
| 81 | |
|---|
| 82 | %) /*tree_data*/ |
|---|
| 83 | |
|---|
| 84 | description "db to test NDS" |
|---|
| 85 | focus %% (% |
|---|
| 86 | tree_name "tree_pars" |
|---|
| 87 | %) /*focus*/ |
|---|
| 88 | |
|---|
| 89 | genom_db %i 0 |
|---|
| 90 | sai_visualize %% (% |
|---|
| 91 | %) /*sai_visualize*/ |
|---|
| 92 | |
|---|
| 93 | arb_presets %% (% |
|---|
| 94 | viewkey %% (% |
|---|
| 95 | key_text "name" |
|---|
| 96 | len1 %i 12 |
|---|
| 97 | pars "\"'\";dd;\"'\"" |
|---|
| 98 | group %i 0 |
|---|
| 99 | leaf %i 1 |
|---|
| 100 | %) /*viewkey*/ |
|---|
| 101 | |
|---|
| 102 | viewkey %% (% |
|---|
| 103 | key_text "full_name" |
|---|
| 104 | len1 %i 30 |
|---|
| 105 | pars ":chloro=\\n:myce=\\t" |
|---|
| 106 | group %i 0 |
|---|
| 107 | leaf %i 1 |
|---|
| 108 | %) /*viewkey*/ |
|---|
| 109 | |
|---|
| 110 | viewkey %% (% |
|---|
| 111 | key_text "" |
|---|
| 112 | len1 %i 30 |
|---|
| 113 | pars "taxonomy(1)" |
|---|
| 114 | group %i 1 |
|---|
| 115 | leaf %i 0 |
|---|
| 116 | %) /*viewkey*/ |
|---|
| 117 | |
|---|
| 118 | viewkey %% (% |
|---|
| 119 | key_text "acc" |
|---|
| 120 | len1 %i 20 |
|---|
| 121 | pars "\"acc=\";dd" |
|---|
| 122 | group %i 0 |
|---|
| 123 | leaf %i 1 |
|---|
| 124 | %) /*viewkey*/ |
|---|
| 125 | |
|---|
| 126 | viewkey %% (% |
|---|
| 127 | key_text "comment" |
|---|
| 128 | len1 %i 0 |
|---|
| 129 | pars "" |
|---|
| 130 | group %i 0 |
|---|
| 131 | leaf %i 1 |
|---|
| 132 | %) /*viewkey*/ |
|---|
| 133 | |
|---|
| 134 | %) /*arb_presets*/ |
|---|
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