source: branches/nameserver/HELP_SOURCE/oldhelp/e4_block.hlp

Last change on this file was 15974, checked in by westram, 8 years ago
  • solve remaining confusion in terminology (concerning "selected species"):
    • sequence-range-blocks in EDIT4 are now called "highlighted species" or "highlighted block"
    • Note: code still talks about selected species
  • Property svn:eol-style set to native
  • Property svn:keywords set to Author Date Id Revision
File size: 2.8 KB
Line 
1#Please insert up references in the next lines (line starts with keyword UP)
2UP      e4.hlp
3
4#Please insert subtopic references  (line starts with keyword SUB)
5SUB     e4_replace.hlp
6
7# Hypertext links in helptext can be added like this: LINK{ref.hlp|http://add|bla@domain}
8
9#************* Title of helpfile !! and start of real helpfile ********
10
11TITLE           ARB_EDIT4 Block Operation
12
13OCCURRENCE      ARB_EDIT4/Block
14
15DESCRIPTION     This menu allows you to perform different block operations.
16
17                All block operations work on what we call 'Highlighted species'.
18
19                To highlight some species use the right mouse button on the
20                name or sequence data of the species/groups. The highlighted
21                sequences or sequence ranges will be drawn with a different
22                background color (see also LINK{e4_background_priority.hlp}).
23
24                More highlighting functions are available in the first section
25                of the Block menu:
26
27                - 'Highlight marked species' highlights all marked species
28                - 'De-highlight marked species' removes highlighting from all marked species
29                - 'Highlight all' highlights all (loaded) species
30                - 'De-highlight all' removes highlighting from all species
31                - 'Invert highlighted species' inverts highlighting of all (loaded) species
32                - 'Invert group' inverts highlighting of all species in group
33                - 'Exchange: Line <-> column' toggles blocktype (see below)
34
35
36                Use the second section of the block menu to transform "highlighting" into
37                "marking" or vice versa.
38
39                Please consider the difference between the following terms:
40
41                  - Marked species:
42
43                    species marked in ARB_NT
44
45                  - Highlighted species:
46
47                    species highlighted in ARB_EDIT4 using right click
48
49                  - Selected species:
50
51                    species under cursor (see LINK{selected.hlp})
52
53                Several actions (third section of Block menu) can be
54                performed on the highlighted block. These actions can be performed
55                repeatedly by typing the number of repeats into the editor window
56                (check 'Properties/Options/Use digits to repeat edit commands?')
57
58                There are two general types of highlighted blocks:
59
60                - Line blocks include the whole sequence range. To activate a line
61                  block first use 'ARB_EDIT4/Block/De-highlight all species' and then right-click
62                  on a species name.
63                - Column blocks include only a part of the sequence. To
64                  activate a column block right-click on the sequence data
65                  and move the mouse while keeping the button pressed.
66
67                 
68                Add/remove species to/from highlighted:
69                [Note that all clicks mentioned below are right clicks!]
70                       
71                - You can add or remove species by clicking on their name.
72                - The first click on a group name (or bracket) will highlight all
73                  species contained in the group and the second click will
74                  un-highlight all.
75
76EXAMPLES        None
77               
78WARNINGS        None
79
80BUGS            None
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