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Last change
on this file was
5968,
checked in by westram, 17 years ago
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- new flag -w to aisc_mkpt (add include wrapper)
- uniform style for several include wrappers
- removed duplicated includes
- removed useless nt_concatenate.hxx
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-
Property svn:eol-style set to
native
-
Property svn:keywords set to
Author Date Id Revision
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File size:
2.1 KB
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| 1 | // =========================================================== // |
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| 2 | // // |
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| 3 | // File : awt_csp.hxx // |
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| 4 | // Purpose : // |
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| 5 | // // |
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| 6 | // Institute of Microbiology (Technical University Munich) // |
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| 7 | // http://www.arb-home.de/ // |
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| 8 | // // |
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| 9 | // =========================================================== // |
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| 10 | |
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| 11 | #ifndef AWT_CSP_HXX |
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| 12 | #define AWT_CSP_HXX |
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| 13 | |
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| 14 | |
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| 15 | /* |
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| 16 | Create a window, that allows you to get weights from the sais |
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| 17 | 1. create AWT_csp |
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| 18 | 2. build button with callback create_csp_window |
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| 19 | 3. call csp->go( second_filter) |
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| 20 | 4. use csp->weights .... |
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| 21 | */ |
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| 22 | |
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| 23 | class AW_root; |
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| 24 | class AW_window; |
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| 25 | |
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| 26 | #define AWT_CSP_AWAR_CSP_NAME "/name=/name" |
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| 27 | #define AWT_CSP_AWAR_CSP_ALIGNMENT "/name=/alignment" |
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| 28 | #define AWT_CSP_AWAR_CSP_SMOOTH "/name=/smooth" |
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| 29 | #define AWT_CSP_AWAR_CSP_ENABLE_HELIX "/name=/enable_helix" |
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| 30 | |
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| 31 | #define DIST_MIN_SEQ(seq_anz) (seq_anz / 10) |
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| 32 | |
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| 33 | class AWT_csp { |
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| 34 | public: |
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| 35 | GBDATA *gb_main; |
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| 36 | AW_root *awr; |
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| 37 | |
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| 38 | char *awar_name; |
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| 39 | char *awar_alignment; |
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| 40 | char *alignment_name; |
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| 41 | char *type_path; |
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| 42 | char *awar_smooth; |
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| 43 | char *awar_enable_helix; |
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| 44 | void *sai_sel_box_id; |
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| 45 | |
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| 46 | /* real public */ |
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| 47 | size_t seq_len; // real length == 0 -> not valid |
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| 48 | GB_UINT4 *weights; // helix = 1, non helix == 2 |
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| 49 | float *rates; |
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| 50 | float *ttratio; |
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| 51 | float *frequency[256]; |
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| 52 | GB_UINT4 *mut_sum; |
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| 53 | GB_UINT4 *freq_sum; |
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| 54 | unsigned char *is_helix; // == 1 -> helix; == 0 -> loop region |
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| 55 | char *desc; |
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| 56 | |
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| 57 | AWT_csp(GBDATA *gb_main, AW_root *awr, const char *awar_template); |
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| 58 | ~AWT_csp(void); |
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| 59 | void exit(); |
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| 60 | GB_ERROR go(AP_filter *filter = 0); |
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| 61 | void print(void); |
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| 62 | }; |
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| 63 | |
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| 64 | AW_window *create_csp_window(AW_root *root, AWT_csp *csp); |
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| 65 | void create_selection_list_on_csp(AW_window *aww, AWT_csp *csp); |
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| 66 | |
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| 67 | |
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| 68 | #else |
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| 69 | #error awt_csp.hxx included twice |
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| 70 | #endif // AWT_CSP_HXX |
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