|
Last change
on this file was
5968,
checked in by westram, 16 years ago
|
- new flag -w to aisc_mkpt (add include wrapper)
- uniform style for several include wrappers
- removed duplicated includes
- removed useless nt_concatenate.hxx
|
-
Property svn:eol-style set to
native
-
Property svn:keywords set to
Author Date Id Revision
|
|
File size:
1.3 KB
|
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| 1 | // =========================================================== // |
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| 2 | // // |
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| 3 | // File : awt_seq_dna.hxx // |
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| 4 | // Purpose : // |
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| 5 | // // |
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| 6 | // Institute of Microbiology (Technical University Munich) // |
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| 7 | // http://www.arb-home.de/ // |
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| 8 | // // |
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| 9 | // =========================================================== // |
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| 10 | |
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| 11 | #ifndef AWT_SEQ_DNA_HXX |
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| 12 | #define AWT_SEQ_DNA_HXX |
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| 13 | |
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| 14 | |
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| 15 | class AP_sequence_parsimony : public AP_sequence { |
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| 16 | private: |
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| 17 | void build_table(void); |
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| 18 | |
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| 19 | public: |
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| 20 | char *sequence; // AP_BASES |
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| 21 | static char *table; |
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| 22 | |
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| 23 | AP_sequence_parsimony(AP_tree_root *rooti); |
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| 24 | ~AP_sequence_parsimony(void); |
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| 25 | |
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| 26 | AP_sequence *dup(void); // used to get the real new element |
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| 27 | void set(const char *sequence); |
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| 28 | AP_FLOAT combine( const AP_sequence * lefts, const AP_sequence *rights) ; |
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| 29 | AP_FLOAT real_len(void); |
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| 30 | void partial_match(const AP_sequence* part, long *overlap, long *penalty) const; |
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| 31 | }; |
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| 32 | |
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| 33 | |
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| 34 | #else |
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| 35 | #error awt_seq_dna.hxx included twice |
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| 36 | #endif // AWT_SEQ_DNA_HXX |
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