1 | // edit_tools.cxx |
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2 | |
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3 | #include <stdio.h> |
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4 | #include <stdlib.h> // system |
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5 | #include <string.h> |
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6 | |
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7 | #include <arbdb.h> |
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8 | #include <adtools.hxx> |
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9 | #include <aw_root.hxx> |
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10 | #include <aw_device.hxx> |
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11 | #include <aw_window.hxx> |
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12 | #include "edit.hxx" |
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13 | |
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14 | void create_tool_variables(AW_root *root,AW_default db1) |
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15 | { |
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16 | root->awar_string( "tmp/tools/search/string", "" , db1); |
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17 | root->awar_string( "tmp/tools/search/replace_string", "" , db1); |
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18 | root->awar_int( "tmp/tools/search/mismatches", 0, db1); |
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19 | root->awar_int( "tmp/tools/search/mistakes_found", 0, db1); |
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20 | root->awar_int( "tmp/tools/search/t_equal_u", 0, db1); |
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21 | root->awar_int( "tmp/tools/search/upper_eq_lower", 0, db1); |
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22 | root->awar_int( "tmp/tools/search/gaps", -1, db1); |
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23 | //-----------------------------------------------------------complement |
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24 | root->awar_int( "tmp/tools/complement/action", 0, db1); |
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25 | root->awar_int( "tmp/tools/complement/gaps_points", 0, db1); |
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26 | root->awar_int( "tmp/tools/complement/left", 0, db1); |
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27 | root->awar_int( "tmp/tools/complement/right", 0, db1); |
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28 | } |
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29 | |
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30 | // ---------------------------------------------------------------- |
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31 | // Search/Replace Liefert alle Sequenzen eines Bereiches. |
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32 | // ---------------------------------------------------------------- |
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33 | void search_get_area( AED_window *aedw, AED_area_entry *get_area_current, |
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34 | ADT_SEARCH *ptr_adt_search, ADT_EDIT *ptr_adt_edit ) { |
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35 | |
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36 | AD_ERR *ad_err; |
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37 | |
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38 | //================================Sequenzsuche solange AREA nicht leer. |
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39 | while( get_area_current != NULL ) { |
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40 | ADT_SEQUENCE *get_area_adt_sequence; |
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41 | |
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42 | if( ptr_adt_search->replace_option != ADT_NO_REPLACE ) { |
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43 | if (aw_status()) break; |
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44 | } |
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45 | //----------------------------------------selektierte sequence |
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46 | if(get_area_current->is_selected != 0) { |
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47 | ptr_adt_edit->selection = 1; |
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48 | // im Alignement selektierten String gefunden |
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49 | } |
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50 | //---------------------------------------------------end selec |
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51 | |
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52 | //-------------------------------------------func aufruf/fehler |
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53 | get_area_adt_sequence = get_area_current->adt_sequence; |
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54 | |
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55 | if( (ptr_adt_edit->selection == 1) && |
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56 | (get_area_adt_sequence != NULL) ){ |
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57 | ad_err = get_area_adt_sequence-> |
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58 | show_edit_seq_search(ptr_adt_search, ptr_adt_edit); |
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59 | //############################################### |
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60 | |
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61 | if(ad_err) { |
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62 | // printf("**** ERROR ADT_SEARCH"); |
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63 | // printf(" show_edit_replace()\n"); |
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64 | aw_message(ad_err->show()); |
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65 | return; |
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66 | } // end if(ad_err) |
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67 | |
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68 | } // end if (selection) |
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69 | //---------------------------------------------end func aufruf |
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70 | |
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71 | //------------------------------------------REPLACE REST EDITOR |
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72 | if(ptr_adt_search->replace_option == ADT_REPLACE_REST_EDITOR) { |
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73 | ptr_adt_edit->found_matchp = 0; |
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74 | ptr_adt_search->replace_loop_sequence = |
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75 | ADT_DONT_STOPP_REPLACE; |
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76 | } |
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77 | //-----------------------------------------------------END REST |
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78 | |
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79 | //-------------------------------------------get next Sequence |
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80 | if( ptr_adt_edit->found_matchp == 0 ) { |
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81 | if(ptr_adt_search->search_direction == |
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82 | ADT_SEARCH_FORWARD) { |
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83 | get_area_current = get_area_current->next; |
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84 | } |
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85 | else { |
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86 | get_area_current = get_area_current->previous; |
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87 | } |
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88 | |
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89 | } |
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90 | //----------matchpattern found |
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91 | else { |
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92 | break; |
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93 | } |
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94 | //------------------------------------------------------------ |
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95 | |
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96 | } //===========================================end while: Sequenzsuche |
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97 | |
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98 | |
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99 | //---------------------------------------------------Eintrag in Editor |
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100 | if(ptr_adt_edit->found_matchp == 1) { |
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101 | set_cursor_to( aedw, |
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102 | (int)ptr_adt_edit->actual_cursorpos_editor, |
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103 | get_area_current ); |
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104 | } |
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105 | //--------------------------------------------------ENDE Editoreintrag |
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106 | |
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107 | } // end func: search_get_area() |
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108 | |
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109 | |
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110 | |
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111 | |
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112 | // -------------------------------------------------------------------------- |
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113 | // Aufruf der Dialogbox > search/replace < + deren Funktionalitaeten |
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114 | // -------------------------------------------------------------------------- |
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115 | void edit_tool_search_cb(AW_window *aw, AED_window *aedwindow, |
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116 | ADT_BUTTON pressed_button ){ |
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117 | |
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118 | AW_root *awroot = aw->get_root(); |
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119 | ADT_SEARCH adt_search; |
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120 | ADT_EDIT adt_edit; |
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121 | AD_ERR *adt_error; |
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122 | |
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123 | long mismatches = awroot->awar("tmp/tools/search/mismatches")->read_int(); //erlaubte Fehler |
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124 | char *search = awroot->awar("tmp/tools/search/string")->read_string(); //Suchstring |
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125 | char *repl_str = awroot->awar("tmp/tools/search/replace_string")->read_string(); //replace String |
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126 | long t_equal_u = awroot->awar("tmp/tools/search/t_equal_u")->read_int(); //t und u gleich? |
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127 | long upper_eq_lower = awroot->awar("tmp/tools/search/upper_eq_lower")->read_int(); //GROSS/klein beachten? |
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128 | long gaps = awroot->awar("tmp/tools/search/gaps")->read_int(); //Gaps beachten? |
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129 | |
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130 | adt_search.matchpattern = search; // Suchstring |
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131 | adt_search.replace_string = repl_str; |
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132 | adt_search.gaps = gaps; // Mit oder ohne Gaps |
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133 | |
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134 | ADT_SEARCH_DIRECTION direction = ADT_SEARCH_FORWARD; |
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135 | ADT_REPLACE_OPTION option = ADT_NO_REPLACE; |
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136 | |
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137 | switch(pressed_button) { |
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138 | |
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139 | // SEARCH-Buttons |
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140 | case BUTTON_SEARCH_ALL: |
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141 | direction = ADT_SEARCH_ALL; |
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142 | break; |
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143 | case BUTTON_SEARCH_FORWARD: |
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144 | direction = ADT_SEARCH_FORWARD; |
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145 | break; |
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146 | case BUTTON_SEARCH_BACKWARD: |
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147 | direction = ADT_SEARCH_BACKWARD; |
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148 | break; |
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149 | |
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150 | // REPLACE-Buttons |
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151 | case BUTTON_REPLACE_ONLY: |
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152 | option = ADT_REPLACE_ONLY; |
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153 | break; |
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154 | case BUTTON_REPLACE_AND_SEARCH_NEXT: |
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155 | direction = ADT_SEARCH_FORWARD; |
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156 | option = ADT_REPLACE_AND_SEARCH_NEXT; |
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157 | break; |
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158 | case BUTTON_SEARCH_AND_REPLACE_NEXT: |
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159 | direction = ADT_SEARCH_FORWARD; |
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160 | option = ADT_SEARCH_AND_REPLACE_NEXT; |
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161 | break; |
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162 | case BUTTON_REPLACE_REST_SEQUENCE: |
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163 | direction = ADT_SEARCH_FORWARD; |
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164 | option = ADT_REPLACE_REST_SEQUENCE; |
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165 | break; |
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166 | case BUTTON_REPLACE_REST_EDITOR: |
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167 | direction = ADT_SEARCH_FORWARD; |
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168 | option = ADT_REPLACE_REST_EDITOR; |
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169 | break; |
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170 | default: |
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171 | GB_warning("Unknown case in switch in search"); |
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172 | // Default ueber Konstruktor von ADT_SEARCH |
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173 | } |
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174 | |
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175 | if(option >= 0) { |
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176 | adt_search.replace_option = option; |
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177 | } |
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178 | //Mehr oder gleichviele Fehler erlaubt |
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179 | //als Suchstring lang? |
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180 | if( strlen(search) == 0 && option < 0 ) { |
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181 | aw_message("********* Please insert Matchpattern! *********"); |
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182 | free(search); |
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183 | return; |
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184 | } |
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185 | |
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186 | /* if( option >= 0 ) { |
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187 | if( strlen(repl_str) == 0 ) { |
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188 | aw_message("********* Please insert Replace-String! *********"); |
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189 | free(search); |
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190 | free(repl_str); |
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191 | return; |
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192 | } |
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193 | } |
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194 | */ |
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195 | |
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196 | if( option >= 0 && adt_search.gaps >= 0 ) { |
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197 | if( strlen(adt_search.matchpattern) != |
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198 | strlen(adt_search.replace_string) ) { |
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199 | aw_message("********* WITHOUT GAPS *********\n Search_String length must be\n\n >>>> EQUAL <<<<\n\n as Replace_String length!"); |
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200 | free(search); |
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201 | free(repl_str); |
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202 | return; |
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203 | } |
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204 | } |
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205 | |
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206 | if( (mismatches > 0) && (strlen(search) <= (unsigned long)mismatches)) { |
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207 | aw_message("********* Mismatches must be lower as Search_String length! *********"); |
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208 | free(search); |
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209 | return; |
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210 | } |
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211 | |
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212 | //--------------------------------------------Anzahl erlaubter Fehler; |
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213 | adt_search.mistakes_allowed = mismatches; |
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214 | //------------------------------------------------------------------- |
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215 | |
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216 | //---------------------------------------Suchen ja, aber im Editor ist |
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217 | //noch nichts markiert! |
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218 | if(aedwindow->one_area_entry_is_selected == false) { |
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219 | |
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220 | //-------------------------------------no selection no replace |
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221 | if( adt_search.replace_option != ADT_NO_REPLACE ) { |
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222 | aw_message("There`s nothing SELECTED !!"); |
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223 | free(search); |
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224 | free(repl_str); |
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225 | return; |
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226 | } |
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227 | //---------------------------------------------end select-repl |
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228 | |
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229 | adt_search.search_direction=ADT_SEARCH_FORWARD; |
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230 | adt_search.search_start_cursor_pos = 0; |
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231 | adt_edit.selection=1; |
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232 | } |
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233 | //-------------------------------------------------------------------- |
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234 | |
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235 | //-------------------------------------Hole Cursorposition der Sequenz; |
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236 | if(aedwindow->cursor_is_managed) { |
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237 | adt_edit.actual_cursorpos_editor = (long) aedwindow->cursor; |
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238 | } |
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239 | //-------------------------------------------------------------------- |
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240 | |
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241 | //---------------------------------------Suchrichtung, Start der Suche; |
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242 | if(direction == ADT_SEARCH_ALL) { |
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243 | adt_search.search_direction=ADT_SEARCH_FORWARD; |
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244 | adt_search.search_start_cursor_pos = 0; |
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245 | adt_edit.actual_cursorpos_editor = -1; |
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246 | adt_edit.selection=1; |
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247 | } |
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248 | else{ |
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249 | adt_search.search_direction = direction; |
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250 | adt_search.search_start_cursor_pos = |
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251 | adt_edit.actual_cursorpos_editor + adt_search.search_direction; |
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252 | } // Cursorpos. +/-1 |
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253 | //-------------------------------------------------------------------- |
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254 | |
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255 | //-------------------------------------------- t und u gleichbehandeln; |
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256 | if(t_equal_u) { |
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257 | adt_search.t_equal_u = 1; // JA |
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258 | } |
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259 | //-------------------------------------------------------------------- |
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260 | |
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261 | //----------------------------------------------- GROSS/klein beachten; |
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262 | if(upper_eq_lower) { |
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263 | adt_search.upper_eq_lower = 1; // JA |
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264 | } |
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265 | //-------------------------------------------------------------------- |
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266 | |
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267 | adt_search.compile(); //Stellt Zeichensatz zur Verfuegung |
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268 | |
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269 | //============================================== REPLACE => DB oeffnen |
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270 | AD_MAIN *database_functions = aedwindow->root->ad_main; |
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271 | |
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272 | if( adt_search.replace_option != ADT_NO_REPLACE ) { |
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273 | adt_error = database_functions->begin_transaction(); |
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274 | if(adt_error) { |
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275 | aw_message("ADT_SEARCH::begin_transaction failed"); |
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276 | } |
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277 | adt_edit.db_status = ADT_DB_OPEN; |
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278 | } |
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279 | // ========================================================== DB offen |
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280 | |
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281 | //--------------------------------------------Funktionsaufrufe liefern |
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282 | //die Sequenzen der drei Bereiche: |
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283 | //Top, Middle, Bottom, ab !! der |
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284 | //markierten Sequenz |
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285 | if( adt_search.replace_option != ADT_NO_REPLACE ) { |
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286 | aw_openstatus("SEARCH & REPLACE"); |
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287 | } |
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288 | |
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289 | if(adt_search.search_direction == ADT_SEARCH_FORWARD) { |
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290 | search_get_area( aedwindow, aedwindow->area_top->first, |
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291 | &adt_search, &adt_edit ); |
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292 | |
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293 | if( adt_edit.found_matchp == 0 ) { |
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294 | search_get_area( aedwindow, |
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295 | aedwindow->area_middle->first, |
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296 | &adt_search, &adt_edit ); |
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297 | } |
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298 | |
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299 | if( adt_edit.found_matchp == 0 ) { |
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300 | search_get_area( aedwindow, |
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301 | aedwindow->area_bottom->first, |
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302 | &adt_search, &adt_edit ); |
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303 | } |
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304 | }else { // adt_search.search_direction == ADT_SEARCH_BACKWARD |
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305 | search_get_area( aedwindow, aedwindow->area_bottom->last, |
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306 | &adt_search, &adt_edit ); |
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307 | |
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308 | if( adt_edit.found_matchp == 0 ) { |
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309 | search_get_area( aedwindow, aedwindow->area_middle->last, |
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310 | &adt_search, &adt_edit ); |
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311 | } |
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312 | |
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313 | if( adt_edit.found_matchp == 0 ) { |
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314 | search_get_area( aedwindow, aedwindow->area_top->last, |
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315 | &adt_search, &adt_edit ); |
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316 | } |
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317 | } |
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318 | |
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319 | aw_closestatus(); |
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320 | |
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321 | //------------------------------------------------------------------- |
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322 | |
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323 | // ======================================================DB schliessen |
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324 | if( adt_edit.db_status == ADT_DB_OPEN ) { |
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325 | adt_error = database_functions->commit_transaction(); |
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326 | |
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327 | if(adt_error) { |
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328 | aw_message("ADT_SEARCH::commit_transaction failed"); |
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329 | } |
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330 | adt_edit.db_status = ADT_DB_CLOSED; |
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331 | } |
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332 | // =====================================================DB geschlossen |
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333 | |
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334 | // ----------------------------------------------------Fehlermeldungen |
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335 | if( (adt_edit.found_matchp == 0) && (adt_search.string_replace == 0)) { |
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336 | aw_message("******** Nothing found! *********"); |
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337 | } |
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338 | |
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339 | if( adt_edit.seq_equal_match == 0 ) { |
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340 | aw_message("********* For Replace_Only *********\nCursor moved ???\nFrom cursorposition on,\nSequence and Matchpattern are not equal! "); |
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341 | } |
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342 | |
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343 | if( adt_edit.replace_overflow == 1 ) { |
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344 | aw_message("********* Didn`t you SEARCH ??? *********\nOr Replace-String is longer as Rest-Sequence !!!"); |
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345 | } |
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346 | //-------------------------------------------------end Fehlermeldungen |
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347 | |
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348 | //-------------------------------------------------Schreiben in Editor |
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349 | //Schreibt Anzahl der gefundenen |
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350 | //Fehler in den Editor |
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351 | awroot->awar("tmp/tools/search/mistakes_found")->write_int( adt_edit.mistakes_found); |
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352 | //------------------------------------------------------end schreiben |
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353 | |
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354 | //-------------------------------------------------Speicher freigeben |
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355 | free(search); |
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356 | free(repl_str); |
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357 | //------------------------------------------------------------------- |
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358 | |
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359 | |
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360 | } // end edit_tool_search_cb() |
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361 | |
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362 | // --------------------------------------------------------------- |
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363 | // Sucht die richtige Sequenz fuer Complement/Invertieren |
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364 | // --------------------------------------------------------------- |
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365 | void compl_get_area( AED_window *aedw, AED_area_entry *get_area_current, ADT_COMPLEMENT *ptr_adt_complement, ADT_EDIT *ptr_adt_edit ) { |
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366 | |
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367 | AD_ERR *ad_err; |
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368 | AWUSE(aedw); |
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369 | |
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370 | while(get_area_current != NULL) |
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371 | { |
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372 | ADT_SEQUENCE *get_area_adt_sequence; |
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373 | AD_SPECIES *ptr_ad_species; |
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374 | |
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375 | //----------------------------------------selektierte sequence |
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376 | if(get_area_current->is_selected != 0) { |
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377 | ptr_adt_edit->selection = 1; |
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378 | // im Alignement selektierten String gefunden |
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379 | } |
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380 | //---------------------------------------------------end selec |
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381 | |
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382 | //-------------------------------------------func aufruf/fehler |
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383 | get_area_adt_sequence = get_area_current->adt_sequence; |
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384 | |
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385 | if( (ptr_adt_edit->selection == 1) && (get_area_adt_sequence != NULL) ) { |
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386 | //---------------------------------------------- Species name |
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387 | ptr_ad_species = get_area_current->ad_species; |
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388 | ptr_adt_complement->species_name = ptr_ad_species->name(); |
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389 | //------------------------------------------ end Species name |
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390 | |
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391 | ad_err = get_area_adt_sequence->show_edit_seq_compl( ptr_adt_complement, ptr_adt_edit); |
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392 | //############################################### |
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393 | |
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394 | if(ad_err) { |
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395 | // printf("**** ERROR ADT_COMPLEMENT"); |
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396 | // printf(" show_edit_seq_compl()\n"); |
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397 | aw_message(ad_err->show()); |
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398 | return; |
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399 | } // end if(ad_err) |
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400 | |
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401 | //-------------------------------------------get next Sequence |
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402 | if((ptr_adt_complement->which_button == BUTTON_COMPL_BLOCK) || |
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403 | (ptr_adt_complement->which_button == BUTTON_COMPL_REST_SEQUENCE) || |
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404 | (ptr_adt_complement->which_button == BUTTON_COMPL_SEQUENCE)) |
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405 | { |
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406 | break; |
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407 | } |
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408 | //------------------------------------------------------------ |
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409 | } // end if (selection) |
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410 | //---------------------------------------------end func aufruf |
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411 | |
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412 | get_area_current = get_area_current->next; |
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413 | |
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414 | } //===========================================end while: Sequenzsuche |
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415 | |
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416 | } // end compl_get_area() |
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417 | |
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418 | // ---------------------------------------------------------- |
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419 | // Bildet das Complement und invertiert die Sequence |
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420 | // ---------------------------------------------------------- |
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421 | void edit_tool_complement_cb(AW_window *aw, AED_window *aedwindow, |
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422 | ADT_BUTTON pressed_button ){ |
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423 | |
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424 | AW_root *awroot = aw->get_root(); |
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425 | AD_ERR *adt_error; |
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426 | ADT_COMPLEMENT adt_complement; |
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427 | ADT_EDIT adt_edit; |
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428 | |
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429 | |
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430 | switch(pressed_button) { |
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431 | |
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432 | case NO_BUTTON: |
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433 | aw_message("Oh Sweety - You are really in trouble now."); |
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434 | return; |
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435 | //break; |
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436 | case BUTTON_COMPL_BLOCK: |
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437 | adt_complement.which_button = BUTTON_COMPL_BLOCK; |
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438 | adt_complement.take_borders = YES; |
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439 | break; |
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440 | case BUTTON_COMPL_REST_SEQUENCE: |
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441 | adt_complement.which_button = BUTTON_COMPL_REST_SEQUENCE; |
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442 | adt_complement.take_cursor = YES; |
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443 | break; |
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444 | case BUTTON_COMPL_SEQUENCE: |
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445 | adt_complement.which_button = BUTTON_COMPL_SEQUENCE; |
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446 | break; |
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447 | case BUTTON_COMPL_REST_TEXT: |
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448 | adt_complement.which_button = BUTTON_COMPL_REST_TEXT; |
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449 | adt_complement.take_cursor = YES; |
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450 | break; |
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451 | case BUTTON_COMPL_ALL: |
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452 | adt_complement.which_button = BUTTON_COMPL_ALL; |
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453 | adt_edit.selection = 1; |
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454 | break; |
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455 | default: |
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456 | GB_warning("Unknown case in switch in search"); |
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457 | } |
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458 | |
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459 | if( (!(adt_complement.which_button == BUTTON_COMPL_ALL)) && |
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460 | (aedwindow->one_area_entry_is_selected == false) |
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461 | ) { |
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462 | aw_message("**** ERROR: no sequence selected !"); |
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463 | return; |
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464 | } |
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465 | |
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466 | // adt_complement.ad_species = aedwindow->selected_area_entry->ad_species; |
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467 | adt_complement.alignment_type = aedwindow->alignment->type(); |
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468 | adt_complement.alignment_name = aedwindow->alignment->name(); |
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469 | adt_complement.alignment_length = aedwindow->alignment->len(); |
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470 | |
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471 | |
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472 | //-----------------------------------------------------complement/invert |
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473 | long action = awroot->awar("tmp/tools/complement/action")->read_int(); |
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474 | if( (action == 0) || (action == 1) ) { // complement |
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475 | adt_complement.complement_seq = YES; |
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476 | } |
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477 | if( (action == 0) || (action == 2) ) { // invert |
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478 | adt_complement.invert_seq = YES; |
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479 | //adt_complement.complement_buffers(); // wird in der fct aufger |
---|
480 | } |
---|
481 | //-------------------------------------------------end complement/invert |
---|
482 | |
---|
483 | //----------------------------------------------------remove GAPS/points |
---|
484 | long gaps_points = awroot->awar("tmp/tools/complement/gaps_points")->read_int(); |
---|
485 | if(gaps_points == 1) { // DEFAULT: 0 = NO !! |
---|
486 | adt_complement.remove_gaps_points = YES; |
---|
487 | } |
---|
488 | //------------------------------------------------end remove GAPS/points |
---|
489 | |
---|
490 | //-------------------------------------Hole Cursorposition der Sequenz; |
---|
491 | if(aedwindow->cursor_is_managed) { |
---|
492 | adt_edit.actual_cursorpos_editor = (long) aedwindow->cursor; |
---|
493 | } |
---|
494 | else { |
---|
495 | adt_edit.actual_cursorpos_editor = 0; |
---|
496 | } |
---|
497 | //--------------------------------------------------------end cursorpos |
---|
498 | |
---|
499 | //---------------------------------------------------------take borders |
---|
500 | if(adt_complement.take_borders == YES) { |
---|
501 | long left_border = awroot->awar("tmp/tools/complement/left")->read_int(); |
---|
502 | long right_border = awroot->awar("tmp/tools/complement/right")->read_int(); |
---|
503 | |
---|
504 | if(left_border < 0) { |
---|
505 | aw_message("**** ERROR: left border >= 0 !"); |
---|
506 | return; |
---|
507 | } |
---|
508 | if(left_border > (adt_complement.alignment_length - 1)) { |
---|
509 | aw_message("**** ERROR: left border <= alignment length !"); |
---|
510 | return; |
---|
511 | |
---|
512 | } |
---|
513 | if(right_border < left_border) { |
---|
514 | aw_message("**** ERROR: right border >= left border !"); |
---|
515 | return; |
---|
516 | } |
---|
517 | if(right_border > (adt_complement.alignment_length - 1)) { |
---|
518 | right_border = (adt_complement.alignment_length - 1); |
---|
519 | } |
---|
520 | |
---|
521 | adt_complement.left_border = left_border; |
---|
522 | adt_complement.right_border = right_border; |
---|
523 | } |
---|
524 | //----------------------------------------------------------end borders |
---|
525 | |
---|
526 | //---------------------------------------------Complement dna/rna/... ? |
---|
527 | if( adt_complement.complement_seq == YES ) { |
---|
528 | if( strcmp(adt_complement.alignment_type,"rna")==0 ) { |
---|
529 | adt_complement.adt_acid = ADT_ALITYPE_RNA; |
---|
530 | } |
---|
531 | else if( strcmp(adt_complement.alignment_type,"dna")==0 ) { |
---|
532 | adt_complement.adt_acid = ADT_ALITYPE_DNA; |
---|
533 | } |
---|
534 | else if( strcmp(adt_complement.alignment_type,"ami")==0 ) { |
---|
535 | //adt_complement.adt_acid = ADT_ALITYPE_AMI; |
---|
536 | aw_message("NO COMPLEMENT: Alignment Type is AMINO-ACID!"); |
---|
537 | return; |
---|
538 | } |
---|
539 | else { |
---|
540 | //adt_complement.adt_acid = ADT_ALITYPE_UNDEFINED; |
---|
541 | aw_message("NO COMPLEMENT: Alignment Type is UNDEFINED!"); |
---|
542 | return; |
---|
543 | } |
---|
544 | adt_complement.complement_compile(); |
---|
545 | } |
---|
546 | //---------------------------------------------------end compl dna/rna/ |
---|
547 | |
---|
548 | //============================================== REPLACE => DB oeffnen |
---|
549 | AD_MAIN *database_functions = aedwindow->root->ad_main; |
---|
550 | |
---|
551 | adt_error = database_functions->begin_transaction(); |
---|
552 | |
---|
553 | if(adt_error) { |
---|
554 | aw_message("ADT_SEARCH::begin_transaction failed"); |
---|
555 | } |
---|
556 | adt_edit.db_status = ADT_DB_OPEN; |
---|
557 | // ========================================================== DB offen |
---|
558 | |
---|
559 | //--------------------------------------------Funktionsaufrufe liefern |
---|
560 | //die Sequenzen der drei Bereiche: |
---|
561 | //Top, Middle, Bottom, ab !! der |
---|
562 | //markierten Sequenz |
---|
563 | |
---|
564 | //soll entfallen compl_get_area( aedwindow, aedwindow->area_top->first, |
---|
565 | // &adt_complement, &adt_edit ); |
---|
566 | |
---|
567 | compl_get_area( aedwindow, aedwindow->area_middle->first, |
---|
568 | &adt_complement, &adt_edit ); |
---|
569 | |
---|
570 | //soll entfallen compl_get_area( aedwindow, aedwindow->area_bottom->first, |
---|
571 | // &adt_complement, &adt_edit ); |
---|
572 | //------------------------------------------------------------------- |
---|
573 | |
---|
574 | // ======================================================DB schliessen |
---|
575 | adt_error = database_functions->commit_transaction(); |
---|
576 | |
---|
577 | if(adt_error) { |
---|
578 | aw_message("ADT_SEARCH::commit_transaction failed"); |
---|
579 | } |
---|
580 | adt_edit.db_status = ADT_DB_CLOSED; |
---|
581 | // =====================================================DB geschlossen |
---|
582 | |
---|
583 | } // end edit_tool_complement_cb() |
---|
584 | |
---|
585 | |
---|
586 | |
---|
587 | |
---|
588 | // ---------------------------------------- |
---|
589 | // gemeinsam in SEARCH und REPLACE |
---|
590 | // ---------------------------------------- |
---|
591 | AW_window *common_window_features( AW_window_simple *aws, |
---|
592 | AED_window *aedwindow ) |
---|
593 | { |
---|
594 | aws->label_length( 7 ); |
---|
595 | aws->button_length( 14 ); |
---|
596 | |
---|
597 | aws->at( "close" ); |
---|
598 | aws->callback ( (AW_CB0)AW_POPDOWN ); |
---|
599 | aws->create_button( "CLOSE", "CLOSE", "C" ); |
---|
600 | |
---|
601 | aws->label_length( 7 ); |
---|
602 | aws->button_length( 18 ); |
---|
603 | |
---|
604 | aws->at("start"); |
---|
605 | aws->callback ( (AW_CB)edit_tool_search_cb, (AW_CL)aedwindow, |
---|
606 | (AW_CL)BUTTON_SEARCH_FORWARD );// +1 |
---|
607 | aws->create_button( "FIND_NEXT", "FIND NEXT ", "1" ); |
---|
608 | |
---|
609 | aws->at("start_rev"); |
---|
610 | aws->callback ( (AW_CB)edit_tool_search_cb, (AW_CL)aedwindow, |
---|
611 | (AW_CL)BUTTON_SEARCH_BACKWARD );// -1 |
---|
612 | aws->create_button( "FIND_BACK", "FIND BACKWARD ", "2" ); |
---|
613 | |
---|
614 | aws->at("start_all"); |
---|
615 | aws->callback ( (AW_CB)edit_tool_search_cb, (AW_CL)aedwindow, |
---|
616 | (AW_CL)BUTTON_SEARCH_ALL ); // 0 |
---|
617 | aws->create_button( "FIND_ALL", "FIND ALL ", "3" ); |
---|
618 | |
---|
619 | aws->at("search"); |
---|
620 | aws->create_input_field("tmp/tools/search/string",49); |
---|
621 | |
---|
622 | aws->at("mismatches"); |
---|
623 | aws->create_input_field("tmp/tools/search/mismatches",3); |
---|
624 | |
---|
625 | aws->at("mistakes"); |
---|
626 | aws->create_button(0,"tmp/tools/search/mistakes_found"); |
---|
627 | |
---|
628 | aws->at("t_equal_u"); |
---|
629 | aws->create_option_menu("tmp/tools/search/t_equal_u",0,""); |
---|
630 | aws->insert_default_option("T <> U","N",0); |
---|
631 | aws->insert_option("T = U ","Y",1); |
---|
632 | aws->update_option_menu(); |
---|
633 | |
---|
634 | aws->at("upper_eq_lower"); |
---|
635 | aws->create_option_menu("tmp/tools/search/upper_eq_lower",0,""); |
---|
636 | aws->insert_default_option("a <> A","N",0); |
---|
637 | aws->insert_option("a = A ","Y",1); |
---|
638 | aws->update_option_menu(); |
---|
639 | |
---|
640 | aws->at("gaps"); |
---|
641 | aws->create_option_menu("tmp/tools/search/gaps",0,""); |
---|
642 | aws->insert_default_option (" 'A-A' <> 'AA' ","D",-1); |
---|
643 | aws->insert_option (" IGNORE GAPS IN SEQ ","S",0); |
---|
644 | aws->insert_option (" IGNORE GAPS IN SEARCH","M",2); |
---|
645 | aws->insert_option (" IGNORE ALL GAPS ","B",1); |
---|
646 | aws->update_option_menu(); |
---|
647 | |
---|
648 | return aws; |
---|
649 | } |
---|
650 | |
---|
651 | AW_window *create_tool_search( AW_root *root, AED_window *aedwindow ) { |
---|
652 | AW_window_simple *aws = new AW_window_simple; |
---|
653 | aws->init( root, "SEARCH_STRING","EDIT SEARCH"); |
---|
654 | aws->load_xfig("ed_searc.fig"); |
---|
655 | |
---|
656 | aws->label_length( 7 ); |
---|
657 | aws->button_length( 14 ); |
---|
658 | |
---|
659 | |
---|
660 | common_window_features( aws, aedwindow ); |
---|
661 | |
---|
662 | return aws; |
---|
663 | } |
---|
664 | |
---|
665 | AW_window *create_tool_replace( AW_root *root, AED_window *aedwindow ) { |
---|
666 | AW_window_simple *aws = new AW_window_simple; |
---|
667 | aws->init( root, "REPLACE_STRING", "EDIT REPLACE"); |
---|
668 | aws->load_xfig("ed_repla.fig"); |
---|
669 | |
---|
670 | aws->label_length( 7 ); |
---|
671 | aws->button_length( 14 ); |
---|
672 | |
---|
673 | // aws->at( "reopen" ); |
---|
674 | // aws->callback ( AW_POPUP, (AW_CL)create_tool_replace, |
---|
675 | // (AW_CL)aedwindow ); |
---|
676 | // aws->create_button( "REOPEN", "R" ); |
---|
677 | |
---|
678 | aws->at("replace"); |
---|
679 | aws->create_input_field("tmp/tools/search/replace_string",49); |
---|
680 | |
---|
681 | aws->button_length( 28 ); |
---|
682 | aws->at("start_replace"); |
---|
683 | aws->callback ( (AW_CB)edit_tool_search_cb, (AW_CL)aedwindow, |
---|
684 | (AW_CL)BUTTON_REPLACE_ONLY ); |
---|
685 | aws->create_button( "REPLACE", "REPLACE", "4" ); |
---|
686 | |
---|
687 | aws->at("replace_and_find_next"); |
---|
688 | aws->callback ( (AW_CB)edit_tool_search_cb, (AW_CL)aedwindow, |
---|
689 | (AW_CL)BUTTON_REPLACE_AND_SEARCH_NEXT ); |
---|
690 | aws->create_button( "REPLACE_FIND", "REPLACE THEN FIND", "5" ); |
---|
691 | |
---|
692 | aws->at("find_and_replace_next"); |
---|
693 | aws->callback ( (AW_CB)edit_tool_search_cb, (AW_CL)aedwindow, |
---|
694 | (AW_CL)BUTTON_SEARCH_AND_REPLACE_NEXT ); |
---|
695 | aws->create_button( "FIND_REPLACE", "FIND THEN REPLACE", "6" ); |
---|
696 | |
---|
697 | aws->at("replace_rest_sequence"); |
---|
698 | aws->callback ( (AW_CB)edit_tool_search_cb, (AW_CL)aedwindow, |
---|
699 | (AW_CL)BUTTON_REPLACE_REST_SEQUENCE ); |
---|
700 | aws->create_button( "REPLACE_TO_END_OF_SEQUENCE", "REPLACE TO END OF SEQUENCE", "7" ); |
---|
701 | |
---|
702 | aws->at("replace_rest_editor"); |
---|
703 | aws->callback ( (AW_CB)edit_tool_search_cb, (AW_CL)aedwindow, |
---|
704 | (AW_CL)BUTTON_REPLACE_REST_EDITOR ); |
---|
705 | aws->create_button( "REPLACE_TO_END_OF_EDITOR", "REPLACE TO END OF EDITOR", "8" ); |
---|
706 | |
---|
707 | common_window_features( aws, aedwindow ); |
---|
708 | return aws; |
---|
709 | } |
---|
710 | |
---|
711 | AW_window *create_tool_complement( AW_root *root, AED_window *aedwindow ) { |
---|
712 | AW_window_simple *aws = new AW_window_simple; |
---|
713 | aws->init( root, "COMPLEMENT_SEQUENCE", "COMPLEMENT and REVERS"); |
---|
714 | aws->load_xfig("ed_compl.fig"); |
---|
715 | |
---|
716 | aws->label_length( 7 ); |
---|
717 | aws->button_length( 14 ); |
---|
718 | |
---|
719 | aws->at( "close" ); |
---|
720 | aws->callback ( (AW_CB0)AW_POPDOWN ); |
---|
721 | aws->create_button( "CLOSE", "CLOSE", "C" ); |
---|
722 | |
---|
723 | |
---|
724 | aws->at("action"); |
---|
725 | aws->create_option_menu("tmp/tools/complement/action",0,""); |
---|
726 | aws->insert_default_option(" COMPLEMENT AND REVERS ","1",0); |
---|
727 | aws->insert_option (" COMPLEMENT ","2",1); |
---|
728 | aws->insert_option (" REVERS ","3",2); |
---|
729 | aws->update_option_menu(); |
---|
730 | |
---|
731 | aws->at("gaps_points"); |
---|
732 | aws->create_toggle("tmp/tools/complement/gaps_points"); |
---|
733 | |
---|
734 | aws->at("left"); |
---|
735 | aws->create_input_field("tmp/tools/complement/left",8); |
---|
736 | |
---|
737 | aws->at("right"); |
---|
738 | aws->create_input_field("tmp/tools/complement/right",8); |
---|
739 | |
---|
740 | aws->button_length( 17 ); |
---|
741 | aws->at("block"); |
---|
742 | aws->callback ( (AW_CB)edit_tool_complement_cb, (AW_CL)aedwindow, |
---|
743 | (AW_CL)BUTTON_COMPL_BLOCK ); |
---|
744 | aws->create_button( "COMPLEMENT_PART", "SEQUENCE PART", "P" ); |
---|
745 | |
---|
746 | aws->at("rest_seq"); |
---|
747 | aws->callback ( (AW_CB)edit_tool_complement_cb, (AW_CL)aedwindow, |
---|
748 | (AW_CL)BUTTON_COMPL_REST_SEQUENCE ); |
---|
749 | aws->create_button( "COMPLEMENT_REST", "REST SEQUENCE", "1" ); |
---|
750 | |
---|
751 | aws->at("sequence"); |
---|
752 | aws->callback ( (AW_CB)edit_tool_complement_cb, (AW_CL)aedwindow, |
---|
753 | (AW_CL)BUTTON_COMPL_SEQUENCE ); |
---|
754 | aws->create_button( "COMPLEMENT_SEQUENCE", "SEQUENCE", "2" ); |
---|
755 | |
---|
756 | aws->at("rest_text"); |
---|
757 | aws->callback ( (AW_CB)edit_tool_complement_cb, (AW_CL)aedwindow, |
---|
758 | (AW_CL)BUTTON_COMPL_REST_TEXT ); |
---|
759 | aws->create_button( "COMPLEMENT_REST_EDITOR", "REST EDITOR", "3" ); |
---|
760 | |
---|
761 | aws->at("all"); |
---|
762 | aws->callback ( (AW_CB)edit_tool_complement_cb, (AW_CL)aedwindow, |
---|
763 | (AW_CL)BUTTON_COMPL_ALL ); |
---|
764 | aws->create_button( "COMPLEMENT_ALL", "ALL", "4" ); |
---|
765 | |
---|
766 | return aws; |
---|
767 | } |
---|