| 1 | # Makefile August 2006 by Alexandros Stamatakis |
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| 2 | # Makefile cleanup October 2006, Courtesy of Peter Cordes <peter@cordes.ca> |
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| 3 | |
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| 4 | CC = gcc |
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| 5 | |
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| 6 | CFLAGS = -O3 -fomit-frame-pointer -funroll-loops -D_USE_PTHREADS -D_GNU_SOURCE #-Wall -pedantic |
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| 7 | #-Wunused-parameter -Wredundant-decls -Wreturn-type -Wswitch-default -Wunused-value -Wimplicit -Wimplicit-function-declaration -Wimplicit-int -Wimport -pedantic-errors -Wunused -Wunused-function -Wunused-label -Wno-int-to-pointer-cast -Wbad-function-cast -Wmissing-declarations -Wmissing-prototypes -Wnested-externs -Wold-style-definition -Wstrict-prototypes -Wdeclaration-after-statement -Wpointer-sign -Wextra -Wmissing-noreturn -Wredundant-decls -Wunused -Wunused-function -Wunused-parameter -Wunused-value -Wunused-variable |
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| 8 | |
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| 9 | |
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| 10 | LIBRARIES = -lm -pthread |
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| 11 | |
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| 12 | RM = rm -f |
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| 13 | |
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| 14 | objs = axml.o raxmlParsimony.o rev_functions.o optimizeModel.o multiple.o searchAlgo.o topologies.o parsePartitions.o treeIO.o models.o bipartitionList.o rapidBootstrap.o evaluatePartialGeneric.o evaluateGeneric.o newviewGeneric.o makenewzGeneric.o evaluateGenericVector.o categorizeGeneric.o |
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| 15 | |
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| 16 | all : raxmlHPC-PTHREADS |
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| 17 | |
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| 18 | GLOBAL_DEPS = axml.h globalVariables.h |
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| 19 | |
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| 20 | raxmlHPC-PTHREADS : $(objs) |
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| 21 | $(CC) -o raxmlHPC-PTHREADS $(objs) $(LIBRARIES) |
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| 22 | |
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| 23 | # Optimization flag -O3 will yield an erroneous code for rev_functions ! |
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| 24 | |
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| 25 | rev_functions.o : rev_functions.c $(GLOBAL_DEPS) |
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| 26 | $(CC) -c -o $@ $< |
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| 27 | |
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| 28 | |
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| 29 | bipartitionList.o : bipartitionList.c $(GLOBAL_DEPS) |
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| 30 | optimizeModel.o : optimizeModel.c $(GLOBAL_DEPS) |
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| 31 | multiple.o : multiple.c $(GLOBAL_DEPS) |
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| 32 | axml.o : axml.c $(GLOBAL_DEPS) |
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| 33 | raxmlParsimony.o : raxmlParsimony.c $(GLOBAL_DEPS) |
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| 34 | searchAlgo.o : searchAlgo.c $(GLOBAL_DEPS) |
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| 35 | topologies.o : topologies.c $(GLOBAL_DEPS) |
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| 36 | parsePartitions.o : parsePartitions.c $(GLOBAL_DEPS) |
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| 37 | treeIO.o : treeIO.c $(GLOBAL_DEPS) |
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| 38 | models.o : models.c $(GLOBAL_DEPS) |
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| 39 | rapidBootstrap.o : rapidBootstrap.c $(GLOBAL_DEPS) |
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| 40 | evaluatePartialGeneric.o : evaluatePartialGeneric.c $(GLOBAL_DEPS) |
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| 41 | evaluateGeneric.o : evaluateGeneric.c $(GLOBAL_DEPS) |
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| 42 | newviewGeneric.o : newviewGeneric.c $(GLOBAL_DEPS) |
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| 43 | makenewzGeneric.o : makenewzGeneric.c $(GLOBAL_DEPS) |
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| 44 | evaluateGenericVector.o : evaluateGenericVector.c $(GLOBAL_DEPS) |
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| 45 | categorizeGeneric.o : categorizeGeneric.c $(GLOBAL_DEPS) |
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| 46 | |
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| 47 | clean : |
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| 48 | $(RM) *.o raxmlHPC-PTHREADS |
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