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Last change
on this file was
5077,
checked in by westram, 17 years ago
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Property svn:eol-style set to
native
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Property svn:keywords set to
Author Date Id Revision
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File size:
947 bytes
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| 1 | item:AxML + FastdnaML |
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| 2 | seqtype: N |
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| 3 | itemmeta: A |
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| 4 | itemmethod:(GOTO_LOCAL_DIR ; \ |
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| 5 | arb_export_rates "$RATES" "T 2.0" "Y 1" "$QUICKADD" | \ |
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| 6 | arb_convert_aln -GenBank in1 -phylip2 infile; \ |
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| 7 | RUN_IN_WINDOW((cp infile last.infile; \ |
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| 8 | time arb_fastdnaml $PROGRAM;$DISPLAY_FUNC)); \ |
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| 9 | RM_LOCAL_FILES(in1 last.infile) )& |
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| 10 | |
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| 11 | itemhelp:dnaml.help |
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| 12 | |
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| 13 | arg:RATES |
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| 14 | argtype:weights |
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| 15 | arglabel:Select a Weighting Mask |
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| 16 | argchoice:POS_VAR_BY_PAR |
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| 17 | |
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| 18 | arg:PROGRAM |
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| 19 | argtype:choice_menu |
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| 20 | arglabel:Select program to use |
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| 21 | argchoice:AxML:axml |
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| 22 | argchoice:FastdnaML:fastdnaml |
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| 23 | |
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| 24 | arg:QUICKADD |
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| 25 | argtype:choice_menu |
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| 26 | arglabel:Use Quickadd |
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| 27 | argchoice:Yes: |
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| 28 | argchoice:No:Q |
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| 29 | |
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| 30 | arg:DISPLAY_FUNC |
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| 31 | argtype:choice_menu |
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| 32 | arglabel:What to do with the tree? |
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| 33 | argchoice:ARB ('tree_fml_//'):arb_read_tree tree_fml_$$ treefile "PRG=$PROGRAM FILTER=$FILTER RATE=$RATES"3 |
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| 34 | argchoice:Treetool:treetool treefile |
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| 35 | |
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| 36 | in:in1 |
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| 37 | informat:genbank |
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| 38 | inmask: |
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| 39 | insave: |
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| 40 | |
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