|
Last change
on this file was
5077,
checked in by westram, 17 years ago
|
|
|
-
Property svn:eol-style set to
native
-
Property svn:keywords set to
Author Date Id Revision
|
|
File size:
990 bytes
|
| Line | |
|---|
| 1 | item:AxML + FastdnaML (max 500 Species) ... |
|---|
| 2 | seqtype: N |
|---|
| 3 | itemmeta: M |
|---|
| 4 | itemmethod:(/bin/rm -f outfile infile treefile ;\ |
|---|
| 5 | arb_export_rates "$RATES" "Y 1" "Q" "R" "G 0 0" "T 2.0" | \ |
|---|
| 6 | arb_convert_aln -GenBank in1 -phylip2 infile;\ |
|---|
| 7 | arb_export_tree $TREE >>infile;\ |
|---|
| 8 | RUN_IN_WINDOW((time arb_fastdnaml $PROGRAM;\ |
|---|
| 9 | $DISPLAY_FUNC));\ |
|---|
| 10 | rm in1 )& |
|---|
| 11 | itemhelp:dnaml.help |
|---|
| 12 | |
|---|
| 13 | arg:RATES |
|---|
| 14 | argtype:weights |
|---|
| 15 | arglabel:Select a Weighting Mask |
|---|
| 16 | argchoice:POS_VAR_BY_PARS |
|---|
| 17 | |
|---|
| 18 | arg:TREE |
|---|
| 19 | argtype:tree |
|---|
| 20 | arglabel:Base Tree |
|---|
| 21 | argchoice: |
|---|
| 22 | |
|---|
| 23 | arg:PROGRAM |
|---|
| 24 | argtype:choice_menu |
|---|
| 25 | arglabel:Select program to use |
|---|
| 26 | argchoice:AxML:axml |
|---|
| 27 | argchoice:FastdnaML:fastdnaml |
|---|
| 28 | |
|---|
| 29 | arg:DISPLAY_FUNC |
|---|
| 30 | argtype:choice_menu |
|---|
| 31 | arglabel:What to do with the tree? |
|---|
| 32 | argchoice:ARB ('tree_fml_//'):arb_read_tree tree_fml_$$ treefile "PRG=$PROGRAM BASETREE=$TREE FILTER=$FILTER PKG=olsen/felsenstein RATE=$RATES" |
|---|
| 33 | argchoice:Treetool:treetool treefile |
|---|
| 34 | |
|---|
| 35 | |
|---|
| 36 | in:in1 |
|---|
| 37 | informat:genbank |
|---|
| 38 | inmask: |
|---|
| 39 | insave: |
|---|
Note: See
TracBrowser
for help on using the repository browser.
