| 1 | /********************************************************************************* |
|---|
| 2 | * Coded by Ralf Westram (coder@reallysoft.de) in 2001 * |
|---|
| 3 | * Institute of Microbiology (Technical University Munich) * |
|---|
| 4 | * http://www.mikro.biologie.tu-muenchen.de/ * |
|---|
| 5 | *********************************************************************************/ |
|---|
| 6 | |
|---|
| 7 | #ifndef GEN_LOCAL_HXX |
|---|
| 8 | #define GEN_LOCAL_HXX |
|---|
| 9 | |
|---|
| 10 | #ifndef GEN_HXX |
|---|
| 11 | #include "GEN.hxx" |
|---|
| 12 | #endif |
|---|
| 13 | |
|---|
| 14 | #ifndef ARB_ASSERT_H |
|---|
| 15 | #include <arb_assert.h> |
|---|
| 16 | #endif |
|---|
| 17 | #define gen_assert(bed) arb_assert(bed) |
|---|
| 18 | |
|---|
| 19 | // to create new genes: |
|---|
| 20 | #define AWAR_GENE_DEST "tmp/gene/dest" |
|---|
| 21 | #define AWAR_GENE_POS1 "tmp/gene/pos1" |
|---|
| 22 | #define AWAR_GENE_POS2 "tmp/gene/pos2" |
|---|
| 23 | #define AWAR_GENE_COMPLEMENT "tmp/gene/compl" |
|---|
| 24 | |
|---|
| 25 | // contains the path to the gene: "organism_name;gene_name" |
|---|
| 26 | // writing this awar has no effect |
|---|
| 27 | #define AWAR_COMBINED_GENE_NAME "tmp/gene/combined_name" |
|---|
| 28 | |
|---|
| 29 | // to extract genes to pseudo-species: |
|---|
| 30 | #define AWAR_GENE_EXTRACT_ALI "tmp/gene/extract/ali" |
|---|
| 31 | |
|---|
| 32 | // -------------------------------------------------------------------------------- |
|---|
| 33 | // view-local awars for organism and gene |
|---|
| 34 | |
|---|
| 35 | #define AWAR_LOCAL_ORGANISM_NAME(window_nr) GEN_window_local_awar_name("tmp/genemap/organism", window_nr) |
|---|
| 36 | #define AWAR_LOCAL_GENE_NAME(window_nr) GEN_window_local_awar_name("tmp/genemap/gene", window_nr) |
|---|
| 37 | |
|---|
| 38 | #define AWAR_LOCAL_ORGANISM_LOCK(window_nr) GEN_window_local_awar_name("tmp/genemap/organism_lock", window_nr) |
|---|
| 39 | #define AWAR_LOCAL_GENE_LOCK(window_nr) GEN_window_local_awar_name("tmp/genemap/gene_lock", window_nr) |
|---|
| 40 | |
|---|
| 41 | // -------------------------------------------------------------------------------- |
|---|
| 42 | // display styles: |
|---|
| 43 | #define AWAR_GENMAP_DISPLAY_TYPE(window_nr) GEN_window_local_awar_name("genemap/display/type", window_nr) |
|---|
| 44 | |
|---|
| 45 | // all display styles: |
|---|
| 46 | #define AWAR_GENMAP_ARROW_SIZE "genemap/display/arrow_size" |
|---|
| 47 | #define AWAR_GENMAP_SHOW_HIDDEN "genemap/display/show_hidden" |
|---|
| 48 | #define AWAR_GENMAP_SHOW_ALL_NDS "genemap/display/show_all_nds" |
|---|
| 49 | |
|---|
| 50 | // display book-style: |
|---|
| 51 | #define AWAR_GENMAP_BOOK_WIDTH_FACTOR "genemap/display/book/width_factor" |
|---|
| 52 | #define AWAR_GENMAP_BOOK_BASES_PER_LINE "genemap/display/book/base_per_line" |
|---|
| 53 | #define AWAR_GENMAP_BOOK_LINE_HEIGHT "genemap/display/book/line_height" |
|---|
| 54 | #define AWAR_GENMAP_BOOK_LINE_SPACE "genemap/display/book/line_space" |
|---|
| 55 | |
|---|
| 56 | // display vertical-style: |
|---|
| 57 | #define AWAR_GENMAP_VERTICAL_FACTOR_X "genemap/display/vertical/factor_x" |
|---|
| 58 | #define AWAR_GENMAP_VERTICAL_FACTOR_Y "genemap/display/vertical/factor_y" |
|---|
| 59 | |
|---|
| 60 | // display radial-style: |
|---|
| 61 | #define AWAR_GENMAP_RADIAL_INSIDE "genemap/display/radial/inside" |
|---|
| 62 | #define AWAR_GENMAP_RADIAL_OUTSIDE "genemap/display/radial/outside" |
|---|
| 63 | |
|---|
| 64 | // other options: |
|---|
| 65 | #define AWAR_GENMAP_AUTO_JUMP "genemap/options/autojump" |
|---|
| 66 | |
|---|
| 67 | // -------------------------------------------------------------------------------- |
|---|
| 68 | |
|---|
| 69 | const char *GEN_window_local_awar_name(const char *awar_name, int window_nr); |
|---|
| 70 | AW_window *GEN_map(AW_root *aw_root, int window_number); |
|---|
| 71 | |
|---|
| 72 | // -------------------------------------------------------------------------------- |
|---|
| 73 | #else |
|---|
| 74 | #error GEN_local.hxx included twice |
|---|
| 75 | #endif // GEN_LOCAL_HXX |
|---|
