| 1 | # INCLUDE und GLOBALS MAIN CC cflags werden von aussen uebergeben |
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| 2 | |
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| 3 | .SUFFIXES: .o .c .cxx .depend |
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| 4 | |
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| 5 | #CFLAGS = -g |
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| 6 | #CFLAGS = -O2 |
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| 7 | CFLAGS = $(cflags) |
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| 8 | |
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| 9 | CPP_OBJECTS = \ |
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| 10 | ali_aligner.o \ |
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| 11 | ali_arbdb.o \ |
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| 12 | ali_global.o \ |
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| 13 | ali_main.o \ |
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| 14 | ali_pathmap.o \ |
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| 15 | ali_prealigner.o \ |
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| 16 | ali_profile.o \ |
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| 17 | ali_pt.o \ |
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| 18 | ali_sequence.o \ |
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| 19 | ali_solution.o \ |
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| 20 | |
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| 21 | $(MAIN): $(CPP_OBJECTS) |
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| 22 | $(LINK_STATIC_LIB) $(MAIN) $(CPP_OBJECTS) |
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| 23 | |
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| 24 | .cxx.o: |
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| 25 | $(CPP) $(CFLAGS) -c -o $@ $< $(CPPINCLUDES) |
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| 26 | |
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| 27 | clean: |
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| 28 | rm -f $(CPP_OBJECTS) *.a |
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| 29 | |
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| 30 | DEPENDS = $(CPP_OBJECTS:.o=.depend) |
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| 31 | depends: $(DEPENDS) |
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| 32 | @cat $(DEPENDS) | grep -v '^#' >>Makefile |
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| 33 | @rm $(DEPENDS) |
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| 34 | $(DEPENDS): depend.init |
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| 35 | depend.init: |
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| 36 | $(MAKEDEPEND) $(MAKEDEPENDFLAGS) 2>/dev/null # remove dependencies |
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| 37 | .c.depend: |
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| 38 | $(MAKEDEPEND) -f- $(MAKEDEPENDFLAGS) $< 2>/dev/null >$@ |
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| 39 | .cxx.depend: |
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| 40 | $(MAKEDEPEND) -f- $(MAKEDEPENDFLAGS) $< 2>/dev/null >$@ |
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| 41 | |
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| 42 | # DO NOT DELETE THIS LINE -- make depend depends on it. |
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| 43 | |
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| 44 | # Do not add dependencies manually - use 'make depend' in $ARBHOME |
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| 45 | # For formatting issues see SOURCE_TOOLS/fix_depends.pl |
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| 46 | |
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| 47 | ali_aligner.o: ali_aligner.hxx |
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| 48 | ali_aligner.o: ali_arbdb.hxx |
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| 49 | ali_aligner.o: ali_misc.hxx |
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| 50 | ali_aligner.o: ali_other_stuff.hxx |
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| 51 | ali_aligner.o: ali_pathmap.hxx |
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| 52 | ali_aligner.o: ali_profile.hxx |
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| 53 | ali_aligner.o: ali_pt.hxx |
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| 54 | ali_aligner.o: ali_sequence.hxx |
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| 55 | ali_aligner.o: ali_solution.hxx |
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| 56 | ali_aligner.o: ali_tarray.hxx |
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| 57 | ali_aligner.o: ali_tlist.hxx |
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| 58 | ali_aligner.o: ali_tstack.hxx |
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| 59 | ali_aligner.o: $(ARBHOME)/INCLUDE/ad_k_prot.h |
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| 60 | ali_aligner.o: $(ARBHOME)/INCLUDE/ad_prot.h |
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| 61 | ali_aligner.o: $(ARBHOME)/INCLUDE/ad_t_prot.h |
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| 62 | ali_aligner.o: $(ARBHOME)/INCLUDE/aisc_func_types.h |
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| 63 | ali_aligner.o: $(ARBHOME)/INCLUDE/arb_assert.h |
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| 64 | ali_aligner.o: $(ARBHOME)/INCLUDE/arbdb.h |
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| 65 | ali_aligner.o: $(ARBHOME)/INCLUDE/arbdb_base.h |
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| 66 | ali_aligner.o: $(ARBHOME)/INCLUDE/arbdbt.h |
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| 67 | ali_aligner.o: $(ARBHOME)/INCLUDE/attributes.h |
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| 68 | ali_aligner.o: $(ARBHOME)/INCLUDE/client.h |
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| 69 | ali_aligner.o: $(ARBHOME)/INCLUDE/PT_com.h |
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| 70 | ali_aligner.o: $(ARBHOME)/INCLUDE/server.h |
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| 71 | ali_aligner.o: $(ARBHOME)/INCLUDE/servercntrl.h |
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| 72 | |
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| 73 | ali_arbdb.o: ali_arbdb.hxx |
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| 74 | ali_arbdb.o: ali_misc.hxx |
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| 75 | ali_arbdb.o: ali_other_stuff.hxx |
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| 76 | ali_arbdb.o: ali_sequence.hxx |
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| 77 | ali_arbdb.o: $(ARBHOME)/INCLUDE/ad_k_prot.h |
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| 78 | ali_arbdb.o: $(ARBHOME)/INCLUDE/ad_prot.h |
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| 79 | ali_arbdb.o: $(ARBHOME)/INCLUDE/ad_t_prot.h |
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| 80 | ali_arbdb.o: $(ARBHOME)/INCLUDE/aisc_func_types.h |
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| 81 | ali_arbdb.o: $(ARBHOME)/INCLUDE/arb_assert.h |
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| 82 | ali_arbdb.o: $(ARBHOME)/INCLUDE/arbdb.h |
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| 83 | ali_arbdb.o: $(ARBHOME)/INCLUDE/arbdb_base.h |
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| 84 | ali_arbdb.o: $(ARBHOME)/INCLUDE/arbdbt.h |
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| 85 | ali_arbdb.o: $(ARBHOME)/INCLUDE/attributes.h |
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| 86 | ali_arbdb.o: $(ARBHOME)/INCLUDE/PT_com.h |
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| 87 | ali_arbdb.o: $(ARBHOME)/INCLUDE/server.h |
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| 88 | ali_arbdb.o: $(ARBHOME)/INCLUDE/servercntrl.h |
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| 89 | |
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| 90 | ali_global.o: ali_arbdb.hxx |
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| 91 | ali_global.o: ali_global.hxx |
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| 92 | ali_global.o: ali_misc.hxx |
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| 93 | ali_global.o: ali_other_stuff.hxx |
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| 94 | ali_global.o: ali_pathmap.hxx |
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| 95 | ali_global.o: ali_prealigner.hxx |
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| 96 | ali_global.o: ali_profile.hxx |
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| 97 | ali_global.o: ali_pt.hxx |
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| 98 | ali_global.o: ali_sequence.hxx |
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| 99 | ali_global.o: ali_solution.hxx |
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| 100 | ali_global.o: ali_tarray.hxx |
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| 101 | ali_global.o: ali_tlist.hxx |
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| 102 | ali_global.o: ali_tstack.hxx |
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| 103 | ali_global.o: $(ARBHOME)/INCLUDE/ad_k_prot.h |
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| 104 | ali_global.o: $(ARBHOME)/INCLUDE/ad_prot.h |
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| 105 | ali_global.o: $(ARBHOME)/INCLUDE/ad_t_prot.h |
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| 106 | ali_global.o: $(ARBHOME)/INCLUDE/aisc_func_types.h |
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| 107 | ali_global.o: $(ARBHOME)/INCLUDE/arb_assert.h |
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| 108 | ali_global.o: $(ARBHOME)/INCLUDE/arbdb.h |
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| 109 | ali_global.o: $(ARBHOME)/INCLUDE/arbdb_base.h |
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| 110 | ali_global.o: $(ARBHOME)/INCLUDE/arbdbt.h |
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| 111 | ali_global.o: $(ARBHOME)/INCLUDE/attributes.h |
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| 112 | ali_global.o: $(ARBHOME)/INCLUDE/client.h |
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| 113 | ali_global.o: $(ARBHOME)/INCLUDE/PT_com.h |
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| 114 | ali_global.o: $(ARBHOME)/INCLUDE/server.h |
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| 115 | ali_global.o: $(ARBHOME)/INCLUDE/servercntrl.h |
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| 116 | |
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| 117 | ali_main.o: ali_aligner.hxx |
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| 118 | ali_main.o: ali_arbdb.hxx |
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| 119 | ali_main.o: ali_global.hxx |
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| 120 | ali_main.o: ali_misc.hxx |
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| 121 | ali_main.o: ali_other_stuff.hxx |
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| 122 | ali_main.o: ali_pathmap.hxx |
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| 123 | ali_main.o: ali_prealigner.hxx |
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| 124 | ali_main.o: ali_profile.hxx |
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| 125 | ali_main.o: ali_pt.hxx |
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| 126 | ali_main.o: ali_sequence.hxx |
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| 127 | ali_main.o: ali_solution.hxx |
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| 128 | ali_main.o: ali_tarray.hxx |
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| 129 | ali_main.o: ali_tlist.hxx |
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| 130 | ali_main.o: ali_tstack.hxx |
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| 131 | ali_main.o: $(ARBHOME)/INCLUDE/ad_k_prot.h |
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| 132 | ali_main.o: $(ARBHOME)/INCLUDE/ad_prot.h |
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| 133 | ali_main.o: $(ARBHOME)/INCLUDE/ad_t_prot.h |
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| 134 | ali_main.o: $(ARBHOME)/INCLUDE/aisc_func_types.h |
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| 135 | ali_main.o: $(ARBHOME)/INCLUDE/arb_assert.h |
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| 136 | ali_main.o: $(ARBHOME)/INCLUDE/arbdb.h |
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| 137 | ali_main.o: $(ARBHOME)/INCLUDE/arbdb_base.h |
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| 138 | ali_main.o: $(ARBHOME)/INCLUDE/arbdbt.h |
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| 139 | ali_main.o: $(ARBHOME)/INCLUDE/attributes.h |
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| 140 | ali_main.o: $(ARBHOME)/INCLUDE/client.h |
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| 141 | ali_main.o: $(ARBHOME)/INCLUDE/PT_com.h |
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| 142 | ali_main.o: $(ARBHOME)/INCLUDE/server.h |
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| 143 | ali_main.o: $(ARBHOME)/INCLUDE/servercntrl.h |
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| 144 | |
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| 145 | ali_pathmap.o: ali_misc.hxx |
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| 146 | ali_pathmap.o: ali_pathmap.hxx |
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| 147 | ali_pathmap.o: ali_tarray.hxx |
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| 148 | ali_pathmap.o: ali_tlist.hxx |
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| 149 | ali_pathmap.o: $(ARBHOME)/INCLUDE/attributes.h |
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| 150 | |
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| 151 | ali_prealigner.o: ali_aligner.hxx |
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| 152 | ali_prealigner.o: ali_arbdb.hxx |
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| 153 | ali_prealigner.o: ali_misc.hxx |
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| 154 | ali_prealigner.o: ali_other_stuff.hxx |
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| 155 | ali_prealigner.o: ali_pathmap.hxx |
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| 156 | ali_prealigner.o: ali_prealigner.hxx |
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| 157 | ali_prealigner.o: ali_profile.hxx |
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| 158 | ali_prealigner.o: ali_pt.hxx |
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| 159 | ali_prealigner.o: ali_sequence.hxx |
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| 160 | ali_prealigner.o: ali_solution.hxx |
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| 161 | ali_prealigner.o: ali_tarray.hxx |
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| 162 | ali_prealigner.o: ali_tlist.hxx |
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| 163 | ali_prealigner.o: ali_tstack.hxx |
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| 164 | ali_prealigner.o: $(ARBHOME)/INCLUDE/ad_k_prot.h |
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| 165 | ali_prealigner.o: $(ARBHOME)/INCLUDE/ad_prot.h |
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| 166 | ali_prealigner.o: $(ARBHOME)/INCLUDE/ad_t_prot.h |
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| 167 | ali_prealigner.o: $(ARBHOME)/INCLUDE/aisc_func_types.h |
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| 168 | ali_prealigner.o: $(ARBHOME)/INCLUDE/arb_assert.h |
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| 169 | ali_prealigner.o: $(ARBHOME)/INCLUDE/arbdb.h |
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| 170 | ali_prealigner.o: $(ARBHOME)/INCLUDE/arbdb_base.h |
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| 171 | ali_prealigner.o: $(ARBHOME)/INCLUDE/arbdbt.h |
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| 172 | ali_prealigner.o: $(ARBHOME)/INCLUDE/attributes.h |
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| 173 | ali_prealigner.o: $(ARBHOME)/INCLUDE/client.h |
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| 174 | ali_prealigner.o: $(ARBHOME)/INCLUDE/PT_com.h |
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| 175 | ali_prealigner.o: $(ARBHOME)/INCLUDE/server.h |
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| 176 | ali_prealigner.o: $(ARBHOME)/INCLUDE/servercntrl.h |
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| 177 | |
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| 178 | ali_profile.o: ali_arbdb.hxx |
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| 179 | ali_profile.o: ali_misc.hxx |
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| 180 | ali_profile.o: ali_other_stuff.hxx |
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| 181 | ali_profile.o: ali_profile.hxx |
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| 182 | ali_profile.o: ali_pt.hxx |
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| 183 | ali_profile.o: ali_sequence.hxx |
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| 184 | ali_profile.o: ali_solution.hxx |
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| 185 | ali_profile.o: ali_tlist.hxx |
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| 186 | ali_profile.o: $(ARBHOME)/INCLUDE/ad_k_prot.h |
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| 187 | ali_profile.o: $(ARBHOME)/INCLUDE/ad_prot.h |
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| 188 | ali_profile.o: $(ARBHOME)/INCLUDE/ad_t_prot.h |
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| 189 | ali_profile.o: $(ARBHOME)/INCLUDE/aisc_func_types.h |
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| 190 | ali_profile.o: $(ARBHOME)/INCLUDE/arb_assert.h |
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| 191 | ali_profile.o: $(ARBHOME)/INCLUDE/arbdb.h |
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| 192 | ali_profile.o: $(ARBHOME)/INCLUDE/arbdb_base.h |
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| 193 | ali_profile.o: $(ARBHOME)/INCLUDE/arbdbt.h |
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| 194 | ali_profile.o: $(ARBHOME)/INCLUDE/attributes.h |
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| 195 | ali_profile.o: $(ARBHOME)/INCLUDE/BI_helix.hxx |
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| 196 | ali_profile.o: $(ARBHOME)/INCLUDE/client.h |
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| 197 | ali_profile.o: $(ARBHOME)/INCLUDE/PT_com.h |
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| 198 | ali_profile.o: $(ARBHOME)/INCLUDE/server.h |
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| 199 | ali_profile.o: $(ARBHOME)/INCLUDE/servercntrl.h |
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| 200 | |
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| 201 | ali_pt.o: ali_misc.hxx |
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| 202 | ali_pt.o: ali_other_stuff.hxx |
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| 203 | ali_pt.o: ali_pt.hxx |
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| 204 | ali_pt.o: ali_sequence.hxx |
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| 205 | ali_pt.o: ali_tlist.hxx |
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| 206 | ali_pt.o: $(ARBHOME)/INCLUDE/ad_k_prot.h |
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| 207 | ali_pt.o: $(ARBHOME)/INCLUDE/ad_prot.h |
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| 208 | ali_pt.o: $(ARBHOME)/INCLUDE/ad_t_prot.h |
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| 209 | ali_pt.o: $(ARBHOME)/INCLUDE/aisc_func_types.h |
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| 210 | ali_pt.o: $(ARBHOME)/INCLUDE/arb_assert.h |
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| 211 | ali_pt.o: $(ARBHOME)/INCLUDE/arbdb.h |
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| 212 | ali_pt.o: $(ARBHOME)/INCLUDE/arbdb_base.h |
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| 213 | ali_pt.o: $(ARBHOME)/INCLUDE/arbdbt.h |
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| 214 | ali_pt.o: $(ARBHOME)/INCLUDE/attributes.h |
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| 215 | ali_pt.o: $(ARBHOME)/INCLUDE/client.h |
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| 216 | ali_pt.o: $(ARBHOME)/INCLUDE/PT_com.h |
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| 217 | ali_pt.o: $(ARBHOME)/INCLUDE/server.h |
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| 218 | ali_pt.o: $(ARBHOME)/INCLUDE/servercntrl.h |
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| 219 | |
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| 220 | ali_sequence.o: ali_misc.hxx |
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| 221 | ali_sequence.o: ali_sequence.hxx |
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| 222 | ali_sequence.o: $(ARBHOME)/INCLUDE/attributes.h |
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| 223 | |
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| 224 | ali_solution.o: ali_arbdb.hxx |
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| 225 | ali_solution.o: ali_misc.hxx |
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| 226 | ali_solution.o: ali_other_stuff.hxx |
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| 227 | ali_solution.o: ali_profile.hxx |
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| 228 | ali_solution.o: ali_pt.hxx |
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| 229 | ali_solution.o: ali_sequence.hxx |
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| 230 | ali_solution.o: ali_solution.hxx |
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| 231 | ali_solution.o: ali_tlist.hxx |
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| 232 | ali_solution.o: $(ARBHOME)/INCLUDE/ad_k_prot.h |
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| 233 | ali_solution.o: $(ARBHOME)/INCLUDE/ad_prot.h |
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| 234 | ali_solution.o: $(ARBHOME)/INCLUDE/ad_t_prot.h |
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| 235 | ali_solution.o: $(ARBHOME)/INCLUDE/aisc_func_types.h |
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| 236 | ali_solution.o: $(ARBHOME)/INCLUDE/arb_assert.h |
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| 237 | ali_solution.o: $(ARBHOME)/INCLUDE/arbdb.h |
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| 238 | ali_solution.o: $(ARBHOME)/INCLUDE/arbdb_base.h |
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| 239 | ali_solution.o: $(ARBHOME)/INCLUDE/arbdbt.h |
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| 240 | ali_solution.o: $(ARBHOME)/INCLUDE/attributes.h |
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| 241 | ali_solution.o: $(ARBHOME)/INCLUDE/client.h |
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| 242 | ali_solution.o: $(ARBHOME)/INCLUDE/PT_com.h |
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| 243 | ali_solution.o: $(ARBHOME)/INCLUDE/server.h |
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| 244 | ali_solution.o: $(ARBHOME)/INCLUDE/servercntrl.h |
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